Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq868 100 3e-16 seq869 96.9 4e-15 seq867 96.9 4e-15 seq866 96.9 4e-15 seq9502 93.3 5e-14 seq20382 89.7 6e-13 seq17042 89.7 6e-13 >seq868 Length=5831 Score = 100 bits (110), Expect = 3e-16 Identities = 172/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 |||||||||| || |||||||| ||| || ||| || | ||||| |||||||| Sbjct 1462 GTCCTCCTTGACATTGAGCAGGAAGCAGCTGCTCAACTGTGGCCGCGGTGTGCCAGCATT 1521 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 107250 ||| || |||||||| ||||| ||||||| ||| ||| | ||| ||||||| Sbjct 1522 GAACAGAGTTGGTGTAGCGTGTGTGAACATCTTCTGGCTCATGAGGGTGTAGGTCTCCAG 1581 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT-ATTGGG 107309 |||| |||||||| | | ||||||||| | || || | ||| | ||||| | | || Sbjct 1582 TGCAGAGTCAATGTCCTGCATGTGGATGCCCAGTGCAACTCTCATGATCATGTGACTTGG 1641 Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGAC 107369 | | || | | ||||||||| || | || ||| | |||| || || |||| | Sbjct 1642 GCG-CTCGACTACCTTGCCATCGATGCGCAGCAGGTAGGACCTCTCTAGTGTCTTGAAGC 1700 Query 107370 CAAAGTA 107376 ||||||| Sbjct 1701 CAAAGTA 1707 >seq869 Length=5680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 |||||||||| || |||||||| ||| || ||| || | ||||| |||||||| Sbjct 1473 GTCCTCCTTGACATTGAGCAGGAAGCAGCTGCTCAGCTGTGGCCGCGGTGTCCCAGCATT 1532 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 107250 ||| || |||||||| ||||| ||||||| ||| ||| | ||| ||||| | Sbjct 1533 GAACAGAGTTGGTGTAGCGTGTGTGAACATCTTCTGGCTCATGAGGGTGTAGGTCTCTAG 1592 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT-ATTGGG 107309 ||||||||||||| | | ||| ||||| | || || | ||| | ||||| | || Sbjct 1593 TGCAGAATCAATGTCCTGCATGTGTATGCCCAGTGCAACCCTCATGATCATGTGGCTTGG 1652 Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGAC 107369 | | || | | ||||||||| || | || ||| | |||| || || |||| || Sbjct 1653 GCG-CTCTACCACCTTGCCATCGATGCGCAGCAGGTAGGACCTCTCTAGTGTCTTGAAAC 1711 Query 107370 CAAAGTA 107376 ||||||| Sbjct 1712 CAAAGTA 1718 >seq867 Length=7666 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||| || || |||| |||| | ||| || || ||||| |||| ||| Sbjct 1153 GTGTACTCAACAATCTCAGTGCACAGGTTGCTGCACTTGATAGTACCCAAGTTCTGCTGG 1094 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 |||||||| ||||||| |||||||| | ||||||||||| || || ||||| |||| Sbjct 1093 TTACTCTTGCTGTTGCAGGCATCCTTAAATAGCATGTAGGGTGTACCTGTCTCACACTGT 1034 Query 106625 G--ACTTGAGAATTGCCTTCCACA 106646 | ||| || || |||| ||||| Sbjct 1033 GCAACT--AGTATAGCCTCCCACA 1012 >seq866 Length=7643 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||| || || ||||||||| | ||| || || |||| |||| ||| Sbjct 1156 GTGTACTCAACAATCTCAGTGCACAAGTTGCTGCACTTGATAGTACCCAGGTTCTGCTGG 1097 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||||| ||||||||| | ||||||||||| || || ||||| |||| Sbjct 1096 TTGCTCTTGCTGTTGCAGGCATCCTTGAACAGCATGTAGGGTGTGCCAGTCTCACACTGT 1037 Query 106625 G--ACTTGAGAATTGCCTTCCACA 106646 | ||| || || |||| ||||| Sbjct 1036 GCAACT--AGTATAGCCTCCCACA 1015 >seq9502 Length=9919 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||| |||||| || || || || | |||| ||||| || || || || |||| || Sbjct 7048 TGTGAACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTG 7107 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||||||||| ||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 7108 GTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTC 7161 >seq20382 Length=10560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||| |||||| || || || || | |||| ||||| || || || || || | || Sbjct 3004 TGTGAACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTG 2945 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||||||||| ||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 2944 GTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTC 2891 >seq17042 Length=860 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||| ||||| ||| ||||| ||||| |||||| | ||| Sbjct 497 GGCAAAGTCTGTGTGCAGACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCC 556 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | ||| |||||||| | |||| | ||||| ||||| || ||||||||| Sbjct 557 AGGCATCATACCACGCTTCTTGAGCCAAAAGATAGCACAGAAGCTGCCACTGAAGAAGAT 616 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAA 117451 ||| || || ||||| || | | ||||| || ||| || | ||| |||| Sbjct 617 ACCTTCTACTGCAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTA-CCTTCTCATCAA 675 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 |||| ||| |||||| | |||||||| | ||| || ||||| Sbjct 676 ACCACCTCAGTGCCCAGCTTGCCTTCTTGGTCACACAAGGGACAGT 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589821586306360