Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4375 116 2e-21 seq1251 116 2e-21 seq2369 102 5e-17 >seq4375 Length=1004 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| || || || || | || |||| || Sbjct 14 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTCA 73 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| | Sbjct 74 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 133 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || | ||| | ||||||||| | || ||||| || Sbjct 134 ATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTG 193 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 194 CCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq1251 Length=1604 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||| ||| | ||||| || ||||| ||||| || || || Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || || || || || || |||||||| | || Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||||||| || ||| | || | ||| | ||||||| Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACA 1451 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || || || ||||| |||||||||||||| Sbjct 1452 TCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||| ||| | |||||| || ||||| ||||||||||| || Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || || || |||||||| | || Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||||||| || ||| | || | ||| | ||||||| Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 985 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAG 34962 || | || ||||| || || || |||| Sbjct 986 TCAAGAGTGATGGTCTTGCCAGTCAGAG 1013 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | |||||| || ||||||||||| ||||| || || | || |||| || Sbjct 341 ACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCA 400 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 401 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGG 460 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || | ||| | ||||||||| | || ||||| || Sbjct 461 ATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGTGTGATGGTCTTG 520 Query 34953 CCCGTGAGAG 34962 || || |||| Sbjct 521 CCAGTCAGAG 530 >seq2369 Length=1144 Score = 102 bits (112), Expect = 5e-17 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||| ||| | ||||| || ||||||||||||||||| || Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || || || |||||||| | || Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||||| || ||| | || | ||| | ||||||| Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACA 177 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAG 34962 || | || ||||| || || || |||| Sbjct 176 TCAAGAGTGATGGTCTTGCCAGTCAGAG 149 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | |||||| || ||||||||||| ||||| || || | || |||| || Sbjct 804 ACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTCA 745 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | ||||||||||| | Sbjct 744 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 685 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || | ||| | ||||||||| | || ||||| || Sbjct 684 ATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGTCTTG 625 Query 34953 CCCGTGAGAG 34962 || || |||| Sbjct 624 CCAGTCAGAG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324548183725992