Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17042 116 4e-21 >seq17042 Length=860 Score = 116 bits (128), Expect = 4e-21 Identities = 411/635 (65%), Gaps = 8/635 (1%) Strand=Plus/Plus Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAA 18743 ||||| ||||||||||| || || || || | || ||| || ||| ||||| |||| || Sbjct 219 ACTCTCTTTTCAAAGAAGTTCGTCTTGCCTTGTAGTGAGAT-CATATCCATCCAATCGAA 277 Query 18744 TGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTAC 18803 |||||| | || ||| || | | |||| | | |||||||| || ||||| Sbjct 278 TGGATTAGATGCACCATACTGCTTATCACAGCCTAGTGTAAGCAGTAGTCTGTCTGCTAC 337 Query 18804 AAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGC 18863 ||| | ||| || | ||||| ||| ||||| || |||| | |||||| || || Sbjct 338 AAACTCAATGTACTGGCACATCAGCCCACTGTTCATACCAATTAGCTCAACAGGCAGAGC 397 Query 18864 ATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATC 18923 | ||| | ||||| | || || || ||||| || || |||| || |||| || Sbjct 398 ACTTGTGATGAATTCCTTCTCAATCTTGACTGCATCACCAATGATAGCAACTACTCGCTC 457 Query 18924 TTCATTAGGAGGGTATAGAAGATGTTT--AAACATCAAACATGCAAAATCACAATGTAGT 18981 || | |||| | | || | || | ||| | || ||||| || || || Sbjct 458 TTG--TGGGAGCTTGTTGACAAGCTTGCCATACAGTAGGCAGGCAAAGTCTGTGTGCAGA 515 Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 || || || | || || | ||||| || || |||||||||| || | || Sbjct 516 CCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCCAGGCATCATACCACGCTTC 575 Query 19042 tttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCTTCTACTGCTGCAAA 19100 || | ||| || |||| | || | | | ||| ||||| |||||||||||||| ||||| Sbjct 576 TTGAGCCAAAAGATAGCA-CAGAAGCTGCCACTGAAGAAGATACCTTCTACTGCAGCAAA 634 Query 19101 AGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATC 19160 || || | || || || | || || | || | || || ||| |||||||||| Sbjct 635 GGCCACCAATCGCTCAGCAAAGCTTGCTACCTTCTCATCAAACCACCTCAGTGCCCAGCT 694 Query 19161 AGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATC 19220 |||||||| | ||||| || | ||||| |||| ||| || || | | |||| Sbjct 695 TGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATTGAACAGCTTGCTCTTCTCAGT 754 Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 | || || || || || |||| | | ||||| || || || ||||| || Sbjct 755 GTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTACACCTCGCTGTGGATGTTTTCAAT 814 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||| ||||| || ||||| || || | || |||| Sbjct 815 AGCAATCTGGAAGCCGTAGAAGCAGCGGGCCTCTG 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561957107913960