Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20785 120 2e-21 seq18584 120 2e-21 seq17201 120 2e-21 seq17200 120 2e-21 >seq20785 Length=6495 Score = 120 bits (132), Expect = 2e-21 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | ||||| ||||| | ||| | |||| | ||||| | || Sbjct 5013 AAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAGTAAAGCAGTTGTTACA 4954 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| || || || || || |||||| | ||||| || || |||||||| || || ||| Sbjct 4953 GTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGATGCTGGCCGCATCGCT 4894 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| |||| | || ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 4893 GGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGCACTTGCCTATGGCCTT 4834 Query 550532 GATAAA 550537 || ||| Sbjct 4833 GACAAA 4828 >seq18584 Length=6491 Score = 120 bits (132), Expect = 2e-21 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | ||||| ||||| | ||| | |||| | ||||| | || Sbjct 1479 AAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAGTAAAGCAGTTGTTACA 1538 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| || || || || || |||||| | ||||| || || |||||||| || || ||| Sbjct 1539 GTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGATGCTGGCCGCATCGCT 1598 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| |||| | || ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 1599 GGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGCACTTGCCTATGGCCTT 1658 Query 550532 GATAAA 550537 || ||| Sbjct 1659 GACAAA 1664 >seq17201 Length=7759 Score = 120 bits (132), Expect = 2e-21 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | ||||| ||||| | ||| | |||| | ||||| | || Sbjct 7100 AAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAGTAAAGCAGTTGTTACA 7041 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| || || || || || |||||| | ||||| || || |||||||| || || ||| Sbjct 7040 GTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGATGCTGGCCGCATCGCT 6981 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| |||| | || ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 6980 GGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGCACTTGCCTATGGCCTT 6921 Query 550532 GATAAA 550537 || ||| Sbjct 6920 GACAAA 6915 >seq17200 Length=7760 Score = 120 bits (132), Expect = 2e-21 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | ||||| ||||| | ||| | |||| | ||||| | || Sbjct 7101 AAGATGAAAGAGACAGCAGAAGCTTTCTTAGGTAGGGGTGTTAGTAAAGCAGTTGTTACA 7042 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| || || || || || |||||| | ||||| || || |||||||| || || ||| Sbjct 7041 GTACCTGCTTACTTCAACGATTCACAAAGGCAAGCAACCAAGGATGCTGGCCGCATCGCT 6982 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || ||| |||| | || ||||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 6981 GGCCTTGATGTGCAGCGCATTATCAATGAACCTACAGCTGCAGCACTTGCCTATGGCCTT 6922 Query 550532 GATAAA 550537 || ||| Sbjct 6921 GACAAA 6916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028154276313610