Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4375 102 6e-17 seq1251 100 2e-16 seq2369 93.3 3e-14 >seq4375 Length=1004 Score = 102 bits (112), Expect = 6e-17 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || || || ||||||||||| || | || Sbjct 5 AGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGG 64 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 65 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 124 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || || | ||| || || | || Sbjct 125 TTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTG 184 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 185 ATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq1251 Length=1604 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || || || |||||||| || ||| | || Sbjct 1281 AGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGACAGAGTGCGG 1340 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || ||||| ||||| || || | || | ||||||| Sbjct 1341 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 1400 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | | || || | ||| || || | || Sbjct 1401 TTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACATCAAGAGTG 1460 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| || || ||||| |||||||| Sbjct 1461 ATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || ||||| ||||| ||||| ||| | || Sbjct 332 AGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGG 391 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 392 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 451 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || || | | || || || | ||| || |||| || Sbjct 452 TTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGTGTG 511 Query 48729 ATCGTTTTTCCCGTCAAAG 48747 || || || || |||| || Sbjct 512 ATGGTCTTGCCAGTCAGAG 530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || || || || || ||||| ||| | || Sbjct 815 AGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGACAGAGTGCGG 874 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 875 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 934 Query 48669 TTGTCGCTAATCTTTTGTTTTAC 48691 ||||| |||||| || || || Sbjct 935 TTGTCCTGAATCTTCTGCTTCAC 957 >seq2369 Length=1144 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || ||||| ||||| ||||| ||| | || Sbjct 813 AGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGG 754 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || ||||| ||||| || || | || | ||||||| Sbjct 753 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 694 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || || | | || || || | ||| || |||| || Sbjct 693 TTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGAGTG 634 Query 48729 ATCGTTTTTCCCGTCAAAG 48747 || || || || |||| || Sbjct 633 ATGGTCTTGCCAGTCAGAG 615 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || |||||||| || ||||| || || ||||| ||| | || Sbjct 347 AGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGACAGAGTGCGG 288 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 287 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 228 Query 48669 TTGTCGCTAATCTTTTGTTTTAC 48691 ||||| ||||| || || || Sbjct 227 TTGTCCTGNATCTTCTGCTTCAC 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380837369246247