Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12022 138 2e-27 seq12021 116 7e-21 seq17042 104 4e-17 seq866 84.2 4e-11 >seq12022 Length=1470 Score = 138 bits (152), Expect = 2e-27 Identities = 268/388 (69%), Gaps = 7/388 (2%) Strand=Plus/Minus Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGT 213529 ||||||| ||||| | | ||||||||||||||| || |||||||||| | | || Sbjct 860 CACAAACCGCGGCAGCACAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTAGT 801 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||||| | ||| |||||||||||||| ||| ||||||| |||||| ||||| Sbjct 800 GTACTCCACAACCTCACAGCACAGGTTGCTGCTCTTGATTGTGCCCAAGTTCTGCTGGTT 741 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGA 213649 ||| | ||| | ||||||||| | ||||||||||| || ||||| | ||||| Sbjct 740 GCTCTTCCCATTGCAGGCATCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGGGC 681 Query 213650 CACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT 213709 | || ||| | ||| | || |||| || ||| || | ||| | | Sbjct 680 ATCTAGGATCCTGTACCACAAGT-CCTGAGCT--CTCACGCGGCGCACAAACTTGCCCTC 624 Query 213710 AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCG 213768 || ||||| | ||| ||||| | ||| || | ||||||| | ||| | || || | Sbjct 623 TGCTTCGTAGCGAGTGTACAGCTCTTCGAAATCTTTGCCCCAGCAGTCTG-CAAGCCCAG 565 Query 213769 GACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAAC 213827 | || | || ||| ||||| | || |||||| ||||| || || | ||||||||| Sbjct 564 GGCACTGGTGTGGG-CACATCAAGCACCAGTCTCCGTCTGCTTCTACGCGCTGCATGAAG 506 Query 213828 AGGTCCGGGACCCACAGCGCGGTGAACA 213855 ||||| |||| |||||| || ||||| Sbjct 505 AGGTCTGGGATCCACAGGCCGTAGAACA 478 >seq12021 Length=1470 Score = 116 bits (128), Expect = 7e-21 Identities = 257/378 (68%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 213480 GGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATG 213539 ||||| | | ||||||||||||||| || |||||||||| | | |||||||||| Sbjct 850 GGCAGCACAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACA 791 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 | ||| |||||| ||||||| ||| ||||||||||| || ||||| ||| | Sbjct 790 ACCTCACAGCACAGATTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCA 731 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 ||| | |||||||| | ||||||||||| || ||||| | ||| | | ||||| Sbjct 730 TTGCAGGCGTCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTATT 671 Query 213660 TGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTAC 213719 | ||| || | | || || | ||| || | ||| | | || ||||| Sbjct 670 CTGTACCACAGAT-CTTGAGCTCG--CACGCGGCGCACAAACTTGCCCTCTGCTTCGTAG 614 Query 213720 TGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACA-GGATG 213777 | ||| ||| | | ||| || | ||||||| | ||| | || || || || | || Sbjct 613 CGAGTGTACAGCGCCTCGAACTCTTTGCCCCAGCAGTCTG-CAAGCCCAGGGCACTGGTG 555 Query 213778 CGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 ||| ||||| | || |||||| ||||| || || | ||||||||| ||||| |||| Sbjct 554 TGGG-CACATCAAGCACCAGTCTCCGTCTGCTTCTACGCGCTGCATGAAGAGGTCTGGGA 496 Query 213838 CCCACAGCGCGGTGAACA 213855 |||||| || ||||| Sbjct 495 TCCACAGGCCGTAGAACA 478 >seq17042 Length=860 Score = 104 bits (114), Expect = 4e-17 Identities = 190/276 (69%), Gaps = 7/276 (3%) Strand=Plus/Plus Query 48000 TGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCA 48059 ||||||| || || || || |||| ||| |||||| || |||||||| |||| | Sbjct 367 TGTTCATACCAATTAGCTCAACAGGCAGAGCACTTGTGATGAATTCCTTCTCAATCTTGA 426 Query 48060 CGGCTTCCCCCACAAT--CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT 48117 | || || || | || | || || || | || | | |||||| || ||| Sbjct 427 CTGCATCACCAATGATAGCAACT--ACTCGCTCTTGTGGGAGCTTGTTGACAAG---CTT 481 Query 48118 GGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTT 48177 | |||| || | |||||||||||| |||||| ||||| || |||||||| ||| | || Sbjct 482 GCCATACAGTAGGCAGGCAAAGTCTGTGTGCAGACCTTCATCACGGCTGATAAGCTCATT 541 Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 | |||||| | |||||||| | || | || |||||||| || || || ||| Sbjct 542 GCTGAAGCACAAGCCAGGCATCATACCACGCTTCTTGAGCCAAAAGATAGCACAGAAGCT 601 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| ||||||||| || || ||||| || || || Sbjct 602 GCCACTGAAGAAGATACCTTCTACTGCAGCAAAGGC 637 >seq866 Length=7643 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | ||||| ||||||| ||||||||| ||| || ||||||||||| ||| Sbjct 1156 GTGTACTCAACAATCTCAGTGCACAAGTTGCTGCACTTGATAGTACCCAGGTTCTGCTGG 1097 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| | ||||||| | ||||||||||| | || ||||| ||| Sbjct 1096 TTGCTCTTGCTGTTGCAGGCATCCTTGAACAGCATGTAGGGTGTGCCAGTCTCACACTGT 1037 Query 213648 GACACCAGTAT 213658 | || ||||| Sbjct 1036 GCAACTAGTAT 1026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931281414229760