Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq17042 100 5e-16 seq12021 96.9 6e-15 seq12022 84.2 4e-11 >seq17042 Length=860 Score = 100 bits (110), Expect = 5e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||||| |||| ||||||||||| || || || ||||| ||||| || || Sbjct 655 TTTGCTGAGCGATTGGTGGCCTTTGCTGCAGTAGAAGGTATCTTCTTCAGTGGCAGCTTC 596 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||| ||||||||| || || | ||||| || ||| ||| ||| ||| Sbjct 595 TGTGCTATCTTTTGGCTCAAGAAGCGTGGTATGATGCCTGGCTTGTGCTTCAGCAATGAG 536 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTA 26039 || |||||| | || || ||||| |||| ||| ||||||||||| || || Sbjct 535 CTTATCAGCCGTGATGAAGGTCTGCACACAGACTTTGCCTGCCTACTGTA 486 >seq12021 Length=1470 Score = 96.9 bits (106), Expect = 6e-15 Identities = 241/360 (67%), Gaps = 7/360 (2%) Strand=Plus/Minus Query 221706 CAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTG 221765 |||||||||||||||| ||||| |||||||| || | |||| |||| | | ||| Sbjct 843 CAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCTCAC 784 Query 221766 TACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAG 221825 || || ||||||| |||||| || ||||||| | || || ||| | |||| | Sbjct 783 AGCACAGATTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGCAGG 724 Query 221826 CGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 |||||||||| | ||| |||| ||| ||||| | |||||| | || || ||| || Sbjct 723 CGTCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTATTCTGTACC 664 Query 221886 AGAGTTCTCTGGCGCTCAC-CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTA 221944 | || ||| || | ||| || | ||| ||||| | ||| || | || Sbjct 663 ACAGATCTTGAGCTCGCACGCGGCGCACAAACT-TGCCCTCTG---CTTCGTAGCGAGTG 608 Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG-GGACA 222003 || ||| || |||| || || | || | || || || || |||| | || || Sbjct 607 TACAGCGCCTCGAACTCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCA-CTGGTGTGGGCA 549 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||||| | ||||| || ||| || | ||||||||||||||| ||||||||||| Sbjct 548 CATCAAGCACCAGTCTCCGTCTGCTTCTACGCGCTGCATGAAGAGGTCTGGGATCCACAG 489 >seq12022 Length=1470 Score = 84.2 bits (92), Expect = 4e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 221706 CAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTG 221765 |||||||||||||||| ||||| |||||||| || | | || |||| | | ||| Sbjct 843 CAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTAGTGTACTCCACAACCTCAC 784 Query 221766 TACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAG 221825 || |||||||||| |||||| || |||| || | || || ||| | |||| | Sbjct 783 AGCACAGGTTGCTGCTCTTGATTGTGCCCAAGTTCTGCTGGTTGCTCTTCCCATTGCAGG 724 Query 221826 CGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 | |||||||| | ||| |||| ||| ||||| | ||| || | || ||| ||| || Sbjct 723 CATCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGGGCATCTAGGATCCTGTACC 664 Query 221886 A 221886 | Sbjct 663 A 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928594139620160