Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq13161 89.7 5e-13 seq13160 89.7 5e-13 seq13159 89.7 5e-13 >seq13161 Length=3939 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 140351 TAACTCGCGATGTTAAATGGAAGACCGAGGAAAACATCTACCGAACGTTGATACCATTGG 140410 ||||| || || || ||||| | ||| || | ||| | |||||||||| ||| Sbjct 469 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 528 Query 140411 -AGGTCAAGGTATCCATTACGCACATTAAACTGATAGAACATATGACAAGGTGGTAATGC 140469 | | ||| | |||||| |||| |||||| ||||||||||||| ||||| ||||| Sbjct 529 CATGACAATTCA-CCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGC 587 Query 140470 CATCTGCTTGAGTTCAGCTGGATTCCATGCCGACACAATTTGACGTCTATC 140520 ||| | | || |||| |||||||||||| ||||| || ||||||||| Sbjct 588 CATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATC 638 >seq13160 Length=3470 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 140351 TAACTCGCGATGTTAAATGGAAGACCGAGGAAAACATCTACCGAACGTTGATACCATTGG 140410 ||||| || || || ||||| | ||| || | ||| | |||||||||| ||| Sbjct 2051 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 1992 Query 140411 -AGGTCAAGGTATCCATTACGCACATTAAACTGATAGAACATATGACAAGGTGGTAATGC 140469 | | ||| | |||||| |||| |||||| ||||||||||||| ||||| ||||| Sbjct 1991 CATGACAATTCA-CCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGC 1933 Query 140470 CATCTGCTTGAGTTCAGCTGGATTCCATGCCGACACAATTTGACGTCTATC 140520 ||| | | || |||| |||||||||||| ||||| || ||||||||| Sbjct 1932 CATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATC 1882 >seq13159 Length=3473 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 140351 TAACTCGCGATGTTAAATGGAAGACCGAGGAAAACATCTACCGAACGTTGATACCATTGG 140410 ||||| || || || ||||| | ||| || | ||| | |||||||||| ||| Sbjct 2051 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 1992 Query 140411 -AGGTCAAGGTATCCATTACGCACATTAAACTGATAGAACATATGACAAGGTGGTAATGC 140469 | | ||| | |||||| |||| |||||| ||||||||||||| ||||| ||||| Sbjct 1991 CATGACAATTCA-CCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGC 1933 Query 140470 CATCTGCTTGAGTTCAGCTGGATTCCATGCCGACACAATTTGACGTCTATC 140520 ||| | | || |||| |||||||||||| ||||| || ||||||||| Sbjct 1932 CATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATC 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532525052665960