Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq869 114 2e-20 seq868 114 2e-20 seq9502 102 1e-16 seq20382 93.3 5e-14 seq867 91.5 2e-13 seq17042 89.7 6e-13 >seq869 Length=5680 Score = 114 bits (126), Expect = 2e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 ||||||||| |||| || || |||| | ||| || | || ||||||||| | | Sbjct 1718 TACTTTGGTTTCAAGACACTAGAGAGGTCCTACCTGCTGCGCATCGATGGCAAGGTGGTA 1659 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || |||| ||||| ||||| |||| ||| | ||||| ||| | | ||||||||| Sbjct 1658 GAGCGCCCAAGCCACATGATCATGAGGGTTGCACTGGGCATACACATGCAGGACATTGAT 1599 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 75325 |||| | ||||| ||| | ||| ||| ||||||| ||||| |||||||| Sbjct 1598 TCTGCACTAGAGACCTACACCCTCATGAGCCAGAAGATGTTCACACACGCTACACCAACT 1539 Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || ||||||||||| ||||| | || ||| || ||| |||||||| || |||| Sbjct 1538 CTGTTCAATGCTGGGACACCGCGGCCACAGCTGAGCAGCTGCTTCCTGCTCAATGTCAAG 1479 Query 75386 GAGGAC 75391 |||||| Sbjct 1478 GAGGAC 1473 >seq868 Length=5831 Score = 114 bits (126), Expect = 2e-20 Identities = 175/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 |||||||| |||| || || |||| | ||| || | || ||||||||| | | Sbjct 1707 TACTTTGGCTTCAAGACACTAGAGAGGTCCTACCTGCTGCGCATCGATGGCAAGGTAGTC 1648 Query 75206 GAAACCCCACAGT-ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || |||| ||| ||||| ||||| | || ||| | ||||||||| | | |||||||| Sbjct 1647 GAGCGCCCA-AGTCACATGATCATGAGAGTTGCACTGGGCATCCACATGCAGGACATTGA 1589 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 75324 |||| ||||||| ||| | ||| ||| ||||||| ||||| |||||||| Sbjct 1588 CTCTGCACTGGAGACCTACACCCTCATGAGCCAGAAGATGTTCACACACGCTACACCAAC 1529 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 || ||||||||||| ||||| | || ||| || ||| |||||||| || ||| Sbjct 1528 TCTGTTCAATGCTGGCACACCGCGGCCACAGTTGAGCAGCTGCTTCCTGCTCAATGTCAA 1469 Query 75385 GGAGGAC 75391 ||||||| Sbjct 1468 GGAGGAC 1462 >seq9502 Length=9919 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| ||||| || ||||| ||||||||||| || |||| ||||||||||| || Sbjct 7161 GAGACTGGCACACCCTACATGCTGTACAAGGATGCCTGCAACAGCAAGAGTAACCAGCAG 7102 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || || || |||||||||||| || || ||||| || || |||||| |||| Sbjct 7101 AACTTAGGCACAATCAAGAGCAGCAACCTCTGCACTGAGATACTAGAGTTCACA 7048 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| | ||| ||||| ||||| | || ||||| ||| | | |||||||| || Sbjct 8963 CCACAGCATATGATCATGAGGGTCTCTATTGGCATACACAAGCATGACATTGACAGTGCT 8904 Query 75272 TTGGAGACATACGACAAGATG--TCCCAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || |||| || |||| || |||| || || |||||||| || | Sbjct 8903 ATTGAGACCTACAACCTGATGAGTCTCAAG-TAC-TTCACACATGCTACACCAACACTGT 8846 Query 75330 TCAATGCTGGTAC-ACCAAGACCGCAGATGTCCAGTTGCTTCCT 75372 ||||||||||||| |||| || |||||| ||| |||||||| Sbjct 8845 TCAATGCTGGTACTGTCAAG-CCACAGATGAGCAGCTGCTTCCT 8803 >seq20382 Length=10560 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| ||||| || ||||| ||||||||||| || |||| ||||||||||| | Sbjct 2891 GAGACTGGCACACCCTACATGCTGTACAAGGATGCCTGCAACAGCAAGAGTAACCAGCAA 2950 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || || || || ||||||||| || || ||||| || || |||||| |||| Sbjct 2951 AACTTAGGCACTATCAAGAGCAGCAACCTCTGCACTGAGATACTAGAGTTCACA 3004 >seq867 Length=7666 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| ||||||| || ||||| ||||| || ||||| || ||||| | |||||| Sbjct 1014 TGGGAGGCTATACTAGTTGCACAGTGTGAGACAGGTACACCCTACATGCTATTTAAGGAT 1073 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| ||||||||||| |||| ||||| || |||||| || || || ||| Sbjct 1074 GCCTGCAACAGCAAGAGTAACCAGCAGAACTTGGGTACTATCAAGTGCAGCAACCTGTGC 1133 Query 75998 ACGGAAATTTTAGAGTACAC 76017 || || ||| | |||||||| Sbjct 1134 ACTGAGATTGTTGAGTACAC 1153 >seq17042 Length=860 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 ||||| || ||| | |||||||| | |||||| ||| |||||||| ||| | Sbjct 721 ACTGTCCCTTGTGTGACCAAGAAGGCAAGCTGGGCACTGAGGTGGTTTGATGAGAAGG-T 663 Query 65065 CGCTC-CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 || ||| || ||||| | | || ||||| || || |||||||||||| || Sbjct 662 AGCAAGCTTTGCTGAGCGATTGGTGGCCTTTGCTGCAGTAGAAGGTATCTTCTTCAGTGG 603 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 ||||| ||||| | |||| | |||||||| ||| | ||||| ||| | |||||| Sbjct 602 CAGCTTCTGTGCTATCTTTTGGCTCAAGAAGCGTGGTATGATGCCTGGCTTGTGCTTCAG 543 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||| ||||| ||| ||||| ||||| ||| || |||||| Sbjct 542 CAATGAGCTTATCAGCCGTGATGAAGGTCTGCACACAGACTTTGCC 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596408608236320