Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17042 111 5e-19 seq12022 102 2e-16 seq17395 95.1 4e-14 seq9502 86.0 2e-11 seq12021 84.2 6e-11 >seq17042 Length=860 Score = 111 bits (122), Expect = 5e-19 Identities = 390/600 (65%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 133295 GTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCAT 133354 || |||||| | || ||||| ||| || || | |||||||| || ||||| ||||| Sbjct 859 GTGCAACTGCCAGAGGCCCGCTGCTTCTACGGCTTCCAGATTGCTATTGAAAACATCCAC 800 Query 133355 TCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAA 133414 || ||| || ||||| || |||| || | | ||||| ||| Sbjct 799 AGCGAGGTGTACTCTCTGCTGATTGACACACTGGTCAAGGACAACACTGAGAAGAGCAAG 740 Query 133415 CTATTCAACGCCATTAGCGAATTTCC-TTGTATTAAAAAGAAATCTGACTGGGCTATTAA 133473 || ||||| || ||| | || | ||| |||| | | ||||| | |||||| | | Sbjct 739 CTGTTCAATGCTATT-GAGACTGTCCCTTGTGTGACCAAGAAGGCAAGCTGGGCACTGAG 681 Query 133474 ATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGA 133533 ||| | | || ||| || || |||||| || | || || ||||||| |||||| Sbjct 680 GTGGTTTGATGAGAAGGTAGCAAGCTTTGCTGAGCGATTGGTGGCCTTTGCTGCAGTAGA 621 Query 133534 GGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCT 133593 || || || |||||||| ||||| |||| |||||||| || ||||||||||| | Sbjct 620 AGGTATCTTCTTCAGTGGCAGCTTCTGTGCTATCTTTTGGCTCAAGAAGCGTGGTATGAT 561 Query 133594 ACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATT 133653 ||||| |||| || || || ||||| | || || | || ||||| || || Sbjct 560 GCCTGGCTTGTGCTTCAGCAATGAGCTTATCAGCCGTGATGAAGGTCTGCACACAGACTT 501 Query 133654 TGCCGTTTTACTTCACTCTAAATTAG--AGCGACCACTCAAAAAGAATAAGATTGAAGAA 133711 |||| |||| | || | | | | | | | | | |||| || | | | Sbjct 500 TGCCTGCCTACTGTATGGCAAGCTTGTCAACAAGCTC-CCACAAGAGCGAG-TAGTTGCT 443 Query 133712 ATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCG- 133770 || ||| | || || || | |||||| ||||| |||| ||||||||||| || | Sbjct 442 ATCATTGGTGATGCAGTCAAGATTGAGAAGGAATTCATCACAAGTGCTCTGCC-TGTTGA 384 Query 133771 TTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATT 133830 ||||||||||||| || ||||||| | || ||||| |||||||| |||||| | Sbjct 383 GCTAATTGGTATGAACAGTGGGCTGATGTGCCAGTACATTGAGTTTGTAGCAGACAGACT 324 Query 133831 GGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGA 133890 || |||| | |||||| || ||| | | ||||||||||| |||||||| Sbjct 323 ACTGCTTACACTAGGCTGTGATAAGCAGTATGGTGCATCTAATCCATTCGATTGGATGGA 264 >seq12022 Length=1470 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || |||| ||||||||||||||| |||||||| ||||| || |||| ||||| Sbjct 801 TGTACTCCACAACCTCACAGCACAGGTTGCTGCTCTTGATTGTGCCCAAGTTCTGCTGGT 742 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || | || || ||||||||||| | ||||| ||||| |||||||| ||||| | Sbjct 741 TGCTCTTCCCATTGCAGGCATCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGGG 682 Query 155749 CGTCCAGAATC 155759 | || || ||| Sbjct 681 CATCTAGGATC 671 >seq17395 Length=8531 Score = 95.1 bits (104), Expect = 4e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 || ||||||||||| || || | ||| ||| | ||||| || || |||||||| | | | Sbjct 7380 GCCAGAGCACCAAGGGACTCTCTGTCAAGGTAGTTAGTTGGCTCATCAAGGATCAAGATG 7321 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAGT 354135 || |||| ||||||| ||||| ||||| || ||||| |||||||| || ||||| || Sbjct 7320 TGAGGCTGGTTCCACATCGCTGCTGCCAGCACGACCTTGACCTTCTGCCCTCCTGACAGA 7261 Query 354136 GC 354137 || Sbjct 7260 GC 7259 >seq9502 Length=9919 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 155634 TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGAT 155693 |||| |||||| ||| ||||| |||||||| |||||||| |||| ||||||| Sbjct 7055 TCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGTTACTC 7114 Query 155694 TTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTC 155740 || ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 7115 TTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTC 7161 >seq12021 Length=1470 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 155595 GCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGG 155654 ||||| || || || || ||||| || | |||| || |||| |||||||||||| Sbjct 835 GCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCTCACAGCACAGA 776 Query 155655 TTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTG 155714 || |||||||| ||||| | || | |||||| || | || || || |||||| Sbjct 775 TTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGCAGGCGTCCTTG 716 Query 155715 TATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 || | ||||| ||||| |||||||| ||||| || || || || Sbjct 715 TACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTAT 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471410481913493