Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq19439 113 6e-19 seq1678 113 6e-19 seq1677 113 6e-19 seq11987 102 1e-15 seq7526 102 1e-15 seq17042 100 3e-15 seq17606 87.8 2e-11 >seq19439 Length=1636 Score = 113 bits (124), Expect = 6e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | ||||| || || |||||| | |||||||||||||| || ||||| Sbjct 1187 CTGTTTGAGCTCATCCTGGCTGCTAACTACATGGACATCAAGCCTCTCCTTGATCTCACC 1128 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||| |||| |||| ||||||||||||||| | || |||||||||||||||||||| Sbjct 1127 TGCGCAACTGTAGCCAGTATGATCAAGGGCAAGACCCCTGAGGAGATCCGCAAGACCTTC 1068 Query 1592288 AACAT 1592292 ||||| Sbjct 1067 AACAT 1063 >seq1678 Length=1502 Score = 113 bits (124), Expect = 6e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | ||||| || || |||||| | |||||||||||||| || ||||| Sbjct 1115 CTGTTTGAGCTCATCCTGGCTGCTAACTACATGGACATCAAGCCTCTCCTTGATCTCACC 1174 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||| |||| |||| ||||||||||||||| | || |||||||||||||||||||| Sbjct 1175 TGCGCAACTGTAGCCAGTATGATCAAGGGCAAGACCCCTGAGGAGATCCGCAAGACCTTC 1234 Query 1592288 AACAT 1592292 ||||| Sbjct 1235 AACAT 1239 >seq1677 Length=1489 Score = 113 bits (124), Expect = 6e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | ||||| || || |||||| | |||||||||||||| || ||||| Sbjct 1102 CTGTTTGAGCTCATCCTGGCTGCTAACTACATGGACATCAAGCCTCTCCTTGATCTCACC 1161 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||| |||| |||| ||||||||||||||| | || |||||||||||||||||||| Sbjct 1162 TGCGCAACTGTAGCCAGTATGATCAAGGGCAAGACCCCTGAGGAGATCCGCAAGACCTTC 1221 Query 1592288 AACAT 1592292 ||||| Sbjct 1222 AACAT 1226 >seq11987 Length=1304 Score = 102 bits (112), Expect = 1e-15 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| || ||||||| || |||||||||| ||||| | | ||||||| Sbjct 1251 CGATGCGCTCGAACACATCGTTGATGAAGGAGTTCATGATGGACATGCCCCTCTTGGAGA 1192 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||| |||||||||||||||||||||||||||||| Sbjct 1191 TGCCAGTGTCTGGGTGCACCTGCTTGAGCACCTTGTAGATG 1151 >seq7526 Length=2926 Score = 102 bits (112), Expect = 1e-15 Identities = 103/131 (79%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || ||||| ||| |||| || || || |||||| | ||||| |||||||| || || ||| Sbjct 271 ACGCTCTTCGAGCTGATACTGGCTGCAAACTACATGGACATTAAGCCTCTACTAGA-CTT 329 Query 1592225 GG---GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAG 1592281 | |||||| |||| || | ||||||||| |||||| |||| || ||||| ||| || Sbjct 330 GACTTGTGCAA--CTGTAGCAAGCATGATCAAAGGCAAGACGCCTGAAGAGATACGCCAG 387 Query 1592282 ACCTTTAACAT 1592292 ||||||||||| Sbjct 388 ACCTTTAACAT 398 >seq17042 Length=860 Score = 100 bits (110), Expect = 3e-15 Identities = 190/279 (68%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || || ||||| | || ||||| ||| | ||| ||||| | || ||||| Sbjct 515 ACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCCAGGCATCATACCACGCTT 574 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||| || ||||| ||||| ||| ||||| || || || || ||||| Sbjct 575 CTTGAGCCAAAAGATAGCACAGAAGCTGCCACTGAAGAAGATACCTTCTACTGCAGCAAA 634 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | | ||||| |||||| | | | ||| || | | |||| ||| ||||| Sbjct 635 GGCCACCAATCGCTCAGCAAAGCTTGCTA---CCTTCTCATCAAACCACCTCAGTGCCCA 691 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | ||||| || |||| | || || || || || || || || | | ||| || Sbjct 692 GCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATTGAACAGCTTGCTCTTCTC 751 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 | ||||||||| ||||| ||||| || || || Sbjct 752 AGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTA 790 Score = 98.7 bits (108), Expect = 1e-14 Identities = 215/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 868693 CTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAA 868752 |||| |||||| || || | | || || ||||| |||||||| | || ||||||| Sbjct 203 CTTGCTGTACTCTCCTACTCTCTTTTCAAAGAAGTTCGTCTTGCCTTGTAGTGAGATCAT 262 Query 868753 CTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCG-ACGCGA 868811 |||||||| ||| || || | | || ||||| || || || || | | || | Sbjct 263 ATCCATCCAATCGAATGGATTAGATGCACCATACTGCTTATCACAGCCTAGTGTAAGC-A 321 Query 868812 GCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGA 868871 | || | ||| || |||||||| |||||||||||||| || || |||||| || || | Sbjct 322 GTAGTCTGTCTGCTACAAACTCAATGTACTGGCACATCAGCCCACTGTTCATACCAATTA 381 Query 868872 GCGCCACCGGCAGCG-ACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | || ||||| | ||| | | | || || ||||| |||| ||| || || | ||| Sbjct 382 GCTCAACAGGCAGAGCACTTG-TGATGAATTCCTTCTCAATCTTGACTGCATCACCAATG 440 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 || || | || || | | |||||||||| ||| | || || |||||||| Sbjct 441 AT-AGCAACTACTCGCTCTTGTGGGAGCTTGTTGACAAGCTTGCCATACAGTAGGCAGGC 499 Query 868990 AAAGTCGCAGTGCA 869003 |||||| ||||| Sbjct 500 AAAGTCTGTGTGCA 513 >seq17606 Length=4373 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/128 (77%), Gaps = 6/128 (5%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGG- 1592226 || |||||| ||||||| || || |||||| | ||||||||||||| || || ||||| Sbjct 2597 CTGTTTGAGCTGATCCTGGCTGCAAACTACATGAACATCAAGCCTCTACTAGA-CTTGGC 2539 Query 1592227 --GTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| | | || | ||||||||| |||||| |||| || ||||| |||| || Sbjct 2538 TTGTGCAA--CGATAGCAAGCATGATCAAAGGCAAGACGCCTGAAGAGATACGCATCACA 2481 Query 1592285 TTTAACAT 1592292 || ||||| Sbjct 2480 TTCAACAT 2473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105367505558713