Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1251 118 1e-21 seq4375 105 6e-18 seq2369 98.7 9e-16 seq866 82.4 7e-11 >seq1251 Length=1604 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | || || || ||||| ||||| || || || || || | ||||| | Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTG-AGCCATC 1440 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||||| || ||||| || || || || || || || Sbjct 1439 TGACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 1380 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| |||||| | | |||| ||||| || Sbjct 1379 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAA 1320 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || ||| ||||| |||| |||| |||||| Sbjct 1319 CATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCGTGGAGGC 1271 >seq4375 Length=1004 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || ||||| || || || || || || || | ||||| | Sbjct 222 ATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTG-AGCCATC 164 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||||| || ||||| || || || || || || || Sbjct 163 TGACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 104 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||||||||| || || ||||| |||||| | | |||| ||||| || Sbjct 103 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAA 44 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 ||| || ||||| || || ||| ||||| |||| |||| Sbjct 43 CATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCG 2 >seq2369 Length=1144 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC-GACACAGTAGAAACGGTAAA 24783 || || || || || || || || || || || |||| | ||||| | || | || || Sbjct 151 CTGACTGGCAAGACCATCACTCTTGATGTTGA-GCCATCTGACACTATTGACAACGTGAA 209 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 || ||||| || ||||| || || || || || || || || ||| |||||||||| || Sbjct 210 GCAGAAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGG 269 Query 24844 GAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903 || ||||| |||||| | | |||| || ||||||||||| ||||| || || Sbjct 270 CAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGAGAGCACTCT 329 Query 24904 ACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| ||||| |||| |||| |||||| Sbjct 330 GCACCTGGTGCTGCGTCTGCGTGGAGGC 357 >seq866 Length=7643 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || ||||| || | ||||| || || |||||||| ||||| | || || || | Sbjct 1155 TGTACTCAACAATCTCAGTGCACAAGTTGCTGCACTTGATAGTACCCAGGTTCTGCTGGT 1096 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC-CACT 139236 |||| || | ||| || ||||| ||| | ||||| || ||||||||||| || |||| Sbjct 1095 TGCTCTTGCTGTTGCAGGCATCCTTGAACAGCATGTAGGGTGTGCCAGTCTCACACT 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449776189508920