Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17042 149 1e-29 seq19439 95.1 2e-13 seq11987 95.1 2e-13 seq1678 95.1 2e-13 seq1677 95.1 2e-13 seq14113 86.0 1e-10 >seq17042 Length=860 Score = 149 bits (164), Expect = 1e-29 Identities = 230/328 (70%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || || ||||| | || ||||| ||||| | ||| ||||| | || ||||| Sbjct 515 ACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCCAGGCATCATACCACGCTT 574 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||| |||||||| ||||| ||| ||||| || || || || ||||| Sbjct 575 CTTGAGCCAAAAGATAGCACAGAAGCTGCCACTGAAGAAGATACCTTCTACTGCAGCAAA 634 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || | ||||| ||||| | | | ||| | | | |||| ||| ||||| Sbjct 635 GGCCACCAATCGCTCAGCAAAGCTTGCTA---CCTTCTCATCAAACCACCTCAGTGCCCA 691 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 |||||| || |||| | || || || || || || || || | | |||||| Sbjct 692 GCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATTGAACAGCTTGCTCTTCTC 751 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||||||||| ||||| || || || ||||| ||| |||||||||||| Sbjct 752 AGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTACACCTCGCTGTGGATGTTTTC 811 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || ||||||||||| || |||||| Sbjct 812 AATAGCAATCTGGAAGCCGTAGAAGCAG 839 >seq19439 Length=1636 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || |||||| | ||||| || || |||||| | ||||||||||| ||||| ||| | Sbjct 1187 CTGTTTGAGCTCATCCTGGCTGCTAACTACATGGACATCAAGCCTCTCCTTGATCTCACC 1128 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| || || |||| | |||||||||||| | || ||||| |||||||||||||| Sbjct 1127 TGCGCAACTGTAGCCAGTATGATCAAGGGCAAGACCCCTGAGGAGATCCGCAAGACCTTC 1068 Query 2035749 AACAT 2035753 ||||| Sbjct 1067 AACAT 1063 >seq11987 Length=1304 Score = 95.1 bits (104), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| || ||||||| || ||||||||||| ||||| | ||||||| Sbjct 1251 CGATGCGCTCGAACACATCGTTGATGAAGGAGTTCATGATGGACATGCCCCTCTTGGAGA 1192 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||| ||| |||||||||||||||||||||||||| Sbjct 1191 TGCCAGTGTCTGGGTGCACCTGCTTGAGCACCTTGTA 1155 >seq1678 Length=1502 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || |||||| | ||||| || || |||||| | ||||||||||| ||||| ||| | Sbjct 1115 CTGTTTGAGCTCATCCTGGCTGCTAACTACATGGACATCAAGCCTCTCCTTGATCTCACC 1174 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| || || |||| | |||||||||||| | || ||||| |||||||||||||| Sbjct 1175 TGCGCAACTGTAGCCAGTATGATCAAGGGCAAGACCCCTGAGGAGATCCGCAAGACCTTC 1234 Query 2035749 AACAT 2035753 ||||| Sbjct 1235 AACAT 1239 >seq1677 Length=1489 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || |||||| | ||||| || || |||||| | ||||||||||| ||||| ||| | Sbjct 1102 CTGTTTGAGCTCATCCTGGCTGCTAACTACATGGACATCAAGCCTCTCCTTGATCTCACC 1161 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 ||| || || |||| | |||||||||||| | || ||||| |||||||||||||| Sbjct 1162 TGCGCAACTGTAGCCAGTATGATCAAGGGCAAGACCCCTGAGGAGATCCGCAAGACCTTC 1221 Query 2035749 AACAT 2035753 ||||| Sbjct 1222 AACAT 1226 >seq14113 Length=4422 Score = 86.0 bits (94), Expect = 1e-10 Identities = 183/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167 || ||||| || || ||||| |||||| |||||| | ||||| ||||||| | ||| Sbjct 937 GCTGTGCTGGAGCTGAATGCCTCAGACTCGCGCGGTATCGACGTAGTGCGTAACAGGATC 878 Query 2019168 AAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCCACAAGGTGATCATCCT 2019226 ||| ||| ||| | | ||| ||||| || || | |||||| | ||||| || Sbjct 877 AAGATGTTTGCTATGAAGAAGGT-GACACTGCCACCAGGGCAGCACAAGATTATCATACT 819 Query 2019227 CGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAA 2019286 ||||| || ||| | | || | || || |||||||| || || || ||||| | Sbjct 818 TGATGAAGCAGACAGTATGACAACAGCAGCTCAGCAGGCGCTGCGGCGCACAATGGAGAT 759 Query 2019287 GTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGC 2019346 | | | |||| || || || || ||||||||||||| | | | |||| || | Sbjct 758 CTTCTCACACACTACCCGCTTCGCCCTGGCCTGCAACAACAGCACAAAGATCATTGAGCC 699 Query 2019347 CCTCCAGAGCCGTTGCGCCATCTTGCGCTTT 2019377 ||||||| | || || ||| |||||||| Sbjct 698 TATCCAGAGTAGGTGTGCTATCCTGCGCTTT 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913949879602571