Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq13161 89.7 3e-13 seq13160 89.7 3e-13 seq13159 89.7 3e-13 >seq13161 Length=3939 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 37894 ATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCAGTT 37953 |||||||||| ||| ||||||| ||||||||||| ||||||| || | ||||| Sbjct 615 ATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCATGTCATATGTTCTGTCAGTT 556 Query 37954 CTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTT 38013 || ||| | ||||| || | ||||| | |||||||||||||||||| | | Sbjct 555 CTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAACGTAGTGCTGATATGGGGCT 496 Query 38014 AGGTGTTCCATTTAATATTGCAAGCTA 38040 ||||| ||||| |||||||| || || Sbjct 495 TGGTGTGCCATTCAATATTGCTAGTTA 469 >seq13160 Length=3470 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 37894 ATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCAGTT 37953 |||||||||| ||| ||||||| ||||||||||| ||||||| || | ||||| Sbjct 1905 ATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCATGTCATATGTTCTGTCAGTT 1964 Query 37954 CTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTT 38013 || ||| | ||||| || | ||||| | |||||||||||||||||| | | Sbjct 1965 CTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAACGTAGTGCTGATATGGGGCT 2024 Query 38014 AGGTGTTCCATTTAATATTGCAAGCTA 38040 ||||| ||||| |||||||| || || Sbjct 2025 TGGTGTGCCATTCAATATTGCTAGTTA 2051 >seq13159 Length=3473 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 37894 ATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCAGTT 37953 |||||||||| ||| ||||||| ||||||||||| ||||||| || | ||||| Sbjct 1905 ATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCATGTCATATGTTCTGTCAGTT 1964 Query 37954 CTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTT 38013 || ||| | ||||| || | ||||| | |||||||||||||||||| | | Sbjct 1965 CTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAACGTAGTGCTGATATGGGGCT 2024 Query 38014 AGGTGTTCCATTTAATATTGCAAGCTA 38040 ||||| ||||| |||||||| || || Sbjct 2025 TGGTGTGCCATTCAATATTGCTAGTTA 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248744134228837