Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq13161 86.0 8e-12 seq13160 86.0 8e-12 seq13159 86.0 8e-12 >seq13161 Length=3939 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 168535 TATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTT 168594 ||||| || || |||| ||| || | || | || | || | |||| || | | | Sbjct 1086 TATGGTTTGTAGCTGGTTGTACTAATGCCAATGTACTACAAGAGAAAGGTATTCATATAT 1027 Query 168595 GGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAG 168654 || | | ||||||| | | || || |||||| | || |||| | ||| |||||| Sbjct 1026 GGGATGGTAATGGTAGTAGAGAGTTCTTAGATAAACTAGGACTTACACATAGAGAAGAAG 967 Query 168655 GTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACT 168714 ||||| | ||||| | ||||| | ||||||| | ||| || ||| ||||| |||| | Sbjct 966 GTGATCTTGGTCCTGTATATGGTTATCAATGGCGTCATTTTGGTGCTAAATATGTTGA-T 908 Query 168715 GTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTA 168752 || ||||||| ||||| || ||||| || || |||||| Sbjct 907 ATGCATACAGACTACACTGGCCAAGGTGTTGATCAATTA 869 >seq13160 Length=3470 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 168535 TATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTT 168594 ||||| || || |||| ||| || | || | || | || | |||| || | | | Sbjct 1434 TATGGTTTGTAGCTGGTTGTACTAATGCCAATGTACTACAAGAGAAAGGTATTCATATAT 1493 Query 168595 GGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAG 168654 || | | ||||||| | | || || |||||| | || |||| | ||| |||||| Sbjct 1494 GGGATGGTAATGGTAGTAGAGAGTTCTTAGATAAACTAGGACTTACACATAGAGAAGAAG 1553 Query 168655 GTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACT 168714 ||||| | ||||| | ||||| | ||||||| | ||| || ||| ||||| |||| | Sbjct 1554 GTGATCTTGGTCCTGTATATGGTTATCAATGGCGTCATTTTGGTGCTAAATATGTTGA-T 1612 Query 168715 GTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTA 168752 || ||||||| ||||| || ||||| || || |||||| Sbjct 1613 ATGCATACAGACTACACTGGCCAAGGTGTTGATCAATTA 1651 >seq13159 Length=3473 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 168535 TATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTT 168594 ||||| || || |||| ||| || | || | || | || | |||| || | | | Sbjct 1434 TATGGTTTGTAGCTGGTTGTACTAATGCCAATGTACTACAAGAGAAAGGTATTCATATAT 1493 Query 168595 GGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAG 168654 || | | ||||||| | | || || |||||| | || |||| | ||| |||||| Sbjct 1494 GGGATGGTAATGGTAGTAGAGAGTTCTTAGATAAACTAGGACTTACACATAGAGAAGAAG 1553 Query 168655 GTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACT 168714 ||||| | ||||| | ||||| | ||||||| | ||| || ||| ||||| |||| | Sbjct 1554 GTGATCTTGGTCCTGTATATGGTTATCAATGGCGTCATTTTGGTGCTAAATATGTTGA-T 1612 Query 168715 GTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTA 168752 || ||||||| ||||| || ||||| || || |||||| Sbjct 1613 ATGCATACAGACTACACTGGCCAAGGTGTTGATCAATTA 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635006189384920