Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq20785 105 5e-17 seq18584 105 5e-17 seq17201 105 5e-17 seq17200 105 5e-17 >seq20785 Length=6495 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 4828 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 4887 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 4888 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 4947 Query 282454 AGGAACAGTAATAACGGC 282471 ||| || |||| ||| || Sbjct 4948 AGGTACTGTAACAACTGC 4965 >seq18584 Length=6491 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 1664 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 1605 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 1604 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 1545 Query 282454 AGGAACAGTAATAACGGC 282471 ||| || |||| ||| || Sbjct 1544 AGGTACTGTAACAACTGC 1527 >seq17201 Length=7759 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 6915 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 6974 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 6975 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 7034 Query 282454 AGGAACAGTAATAACGGC 282471 ||| || |||| ||| || Sbjct 7035 AGGTACTGTAACAACTGC 7052 >seq17200 Length=7760 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| ||||| ||||| |||| || ||||| || |||||||| ||||| | | |||| Sbjct 6916 TTTGTCAAGGCCATAGGCAAGTGCTGCAGCTGTAGGTTCATTGATAATGCGCTGCACATC 6975 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| ||||| || | || ||||| || || ||||| |||||||||||||| || || || Sbjct 6976 AAGGCCAGCGATGCGGCCAGCATCCTTGGTTGCTTGCCTTTGTGAATCGTTGAAGTAAGC 7035 Query 282454 AGGAACAGTAATAACGGC 282471 ||| || |||| ||| || Sbjct 7036 AGGTACTGTAACAACTGC 7053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739570471335114