Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq13161 86.0 7e-12 seq13160 86.0 7e-12 seq13159 86.0 7e-12 >seq13161 Length=3939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 143081 CGTTGATACCATTGTAAATCAAGATA-ACCATTACGCACATTAAACTGATAGAACATATG 143139 ||||||||| ||| | || | || ||||||| |||| |||||| |||||||||| Sbjct 514 CGTTGATACATTTG-ACATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATG 572 Query 143140 ACAAGGCGGTAATGCCATTTGATTGATTTCAGCTGGATTCCATGCTGAAACGATTTGACG 143199 ||| || || |||||||||| || | |||| ||||||||||||||| || || ||| Sbjct 573 ACATGGTGGCAATGCCATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACG 632 Query 143200 TCGATC 143205 || ||| Sbjct 633 TCTATC 638 >seq13160 Length=3470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 143081 CGTTGATACCATTGTAAATCAAGATA-ACCATTACGCACATTAAACTGATAGAACATATG 143139 ||||||||| ||| | || | || ||||||| |||| |||||| |||||||||| Sbjct 2006 CGTTGATACATTTG-ACATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATG 1948 Query 143140 ACAAGGCGGTAATGCCATTTGATTGATTTCAGCTGGATTCCATGCTGAAACGATTTGACG 143199 ||| || || |||||||||| || | |||| ||||||||||||||| || || ||| Sbjct 1947 ACATGGTGGCAATGCCATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACG 1888 Query 143200 TCGATC 143205 || ||| Sbjct 1887 TCTATC 1882 >seq13159 Length=3473 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 143081 CGTTGATACCATTGTAAATCAAGATA-ACCATTACGCACATTAAACTGATAGAACATATG 143139 ||||||||| ||| | || | || ||||||| |||| |||||| |||||||||| Sbjct 2006 CGTTGATACATTTG-ACATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATG 1948 Query 143140 ACAAGGCGGTAATGCCATTTGATTGATTTCAGCTGGATTCCATGCTGAAACGATTTGACG 143199 ||| || || |||||||||| || | |||| ||||||||||||||| || || ||| Sbjct 1947 ACATGGTGGCAATGCCATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACG 1888 Query 143200 TCGATC 143205 || ||| Sbjct 1887 TCTATC 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538830550589200