Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4375 123 5e-23 seq2369 109 1e-18 seq1251 107 4e-18 >seq4375 Length=1004 Score = 123 bits (136), Expect = 5e-23 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 || |||||| || | ||||||||| || ||||| || || |||||||| || | | Sbjct 4 CAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCG 63 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 || || || || || || ||||||||||| || | || || || || || || || || Sbjct 64 GCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 123 Query 82712 CTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAG 82770 ||| || |||||||| ||| || || || ||||| || ||| || || || || | || Sbjct 124 CTTGTCCTGAATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAG 182 Query 82771 TTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || |||||||| |||| ||||| || || |||||||| ||| Sbjct 183 TGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATGATT 226 >seq2369 Length=1144 Score = 109 bits (120), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || |||||| || | ||||||||| || ||||| || ||||| ||||| Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||||||||| || | || || || || || Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||| || || || ||||| || ||| || || || Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAAC 178 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCA 82788 || | ||| || |||||||| |||| Sbjct 177 ATCAAGAGTGATGGTCTTGCCAGTCA 152 >seq1251 Length=1604 Score = 107 bits (118), Expect = 4e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || |||||| || | |||||| || || ||||| || ||||| ||||| Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||||||||| || | || || || || || Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || |||||||| ||| || || || ||||| || ||| || || || Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAAC 984 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCA 82788 || | ||| || |||||||| |||| Sbjct 985 ATCAAGAGTGATGGTCTTGCCAGTCA 1010 Score = 96.9 bits (106), Expect = 7e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | |||||| || | |||||| || || ||||| || || || ||||| Sbjct 322 ACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGA 381 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || || || || || || ||||||||||| || | || || || || || Sbjct 382 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 441 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 || || ||||| || || ||||| ||| || || || ||||| || ||| || || | Sbjct 442 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAA 500 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCA 82788 | |||| || || |||||||| |||| Sbjct 501 CATCCAGTGTGATGGTCTTGCCAGTCA 527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981555617698671