Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12021 140 3e-28 seq1251 131 2e-25 seq4375 127 2e-24 seq2369 104 2e-17 seq866 104 2e-17 seq18313 102 8e-17 seq18312 100 3e-16 seq9502 96.9 3e-15 seq20382 91.5 1e-13 seq867 87.8 2e-12 seq4166 82.4 7e-11 >seq12021 Length=1470 Score = 140 bits (154), Expect = 3e-28 Identities = 248/358 (69%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 ||| || |||||||| ||| ||| || | | | ||||||| || | ||| |||||| Sbjct 836 GGCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCTCACAGCACAG 777 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 |||||||| ||||| ||||| ||| | || |||||||| | ||||| |||||||| Sbjct 776 ATTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGCAGGCGTCCTT 717 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA---TGAACCGATGCAG 149005 ||||| |||||| || ||| || || | ||| | || | || || ||| ||| Sbjct 716 GTACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTATTCTGTACC---ACAG 660 Query 149006 GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGC-TCGTATAAAGTATACAGCC 149064 || || || ||||| | || | | |||| |||| ||||| ||| |||||| Sbjct 659 ATCTTGAGCTCGCACGCGGCGCACAAACTTGCCCT-CTGCTTCGTAGCGAGTGTACAGCG 601 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 ||||||| | | ||| |||| || | || || ||||||| ||| |||||||| | Sbjct 600 CCTCGAACTCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCACTGGTGTGGGCACATCAAGC 541 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTA 149182 |||| | ||||| || | ||||||| ||| || || || || | ||| || |||| Sbjct 540 ACCAGTCTCCGTCTGCTTCTACGCGCTGCATGAAGAGGTCTGGGATCCACAGGCCGTA 483 >seq1251 Length=1604 Score = 131 bits (144), Expect = 2e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||||||| || ||| | | | ||||| ||||||||||| ||| Sbjct 1307 CTCCTTCTGGATGTTGTAATCGGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGCCAGCGA 1365 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || |||||||| |||||||| ||||| ||||| | | Sbjct 1366 AGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGT 1425 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||| | ||||| || || | |||| ||||||||||||||| || || | Sbjct 1426 TGTCGATGGTGTCAGATGGCTCAACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGA 1485 Query 133648 CGAAAATCTGCATG 133661 | || ||||||||| Sbjct 1486 CAAAGATCTGCATG 1499 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| || Sbjct 358 CTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGCCAGCAA 416 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || |||||||| |||||||| |||||| ||||| | | Sbjct 417 AGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGT 476 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 |||| ||||| | ||||| || || | |||| ||| ||||| ||||||| Sbjct 477 TGTCAATAGTGTCAGATGGCTCAACATCCAGTGTGATGGTCTTGCCAGTCAGAG 530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || ||||||||||| || |||||||| |||||| Sbjct 878 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 937 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | | |||| ||||| | ||||| || || | |||| | Sbjct 938 TCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCAAGAGTGATG 997 Query 133626 GTTTTGCCGGTCAGAG 133641 || ||||| ||||||| Sbjct 998 GTCTTGCCAGTCAGAG 1013 >seq4375 Length=1004 Score = 127 bits (140), Expect = 2e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || |||||||| || ||| | | | ||||| ||||||||||| || Sbjct 31 CTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCA-TCCTCAAGCTGCTTGCCAGCAA 89 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || |||||||| |||||||| ||||| ||||| | | Sbjct 90 AGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGT 149 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 |||| ||||| | ||||| || || | |||| ||| ||||||||||| || || | Sbjct 150 TGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTCTTGCCGGTCAGTGTCTTCA 209 Query 133648 CGAAAATCTGCATG 133661 |||| ||||||||| Sbjct 210 CGAAGATCTGCATG 223 >seq2369 Length=1144 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| ||| Sbjct 787 CTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGCCAGCGA 729 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || |||||||| |||||||| ||||| ||||| | | Sbjct 728 AGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGT 669 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 |||| ||||| | ||||| || || | |||| ||| ||||| ||||||| Sbjct 668 TGTCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAG 615 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | || || ||||||||||| || |||||||| |||||| Sbjct 284 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 225 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | | |||| ||||| | ||||| || || | |||| | Sbjct 224 TCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCAAGAGTGATG 165 Query 133626 GTTTTGCCGGTCAGAG 133641 || ||||| ||||||| Sbjct 164 GTCTTGCCAGTCAGAG 149 >seq866 Length=7643 Score = 104 bits (114), Expect = 2e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | ||||| |||||||| ||||| |||| ||||| || | Sbjct 1155 TGTACTCAACAATCTCAGTGCACAAGTTGCTGCACTTGATAGTACCCAGGTTCTGCTGGT 1096 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 |||||||||||||||| || |||||| |||||||||| ||| |||||| || Sbjct 1095 TGCTCTTGCTGTTGCAGGCATCCTTGAACAGCATGTAGGGTGTGCCAGTCTC 1044 >seq18313 Length=2265 Score = 102 bits (112), Expect = 8e-17 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| || ||| | | | ||||||||||||||||| ||| Sbjct 2133 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCA-TCCTCGAGCTGCTTGCCAGCGA 2191 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | ||||| |||||||| || || |||||||| |||||||| |||||| ||||||| | Sbjct 2192 AGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGT 2251 Query 133588 GCTCAACCGTGTC 133600 |||| ||||| Sbjct 2252 TGTCAATGGTGTC 2264 >seq18312 Length=2245 Score = 100 bits (110), Expect = 3e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| || ||| | | | ||||||||||||||||| ||| Sbjct 2128 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCA-TCCTCGAGCTGCTTGCCAGCGA 2186 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGA 133584 | ||||| |||||||| || || |||||||| |||||||| |||||| ||||||| Sbjct 2187 AGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA 2243 >seq9502 Length=9919 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 || |||||| ||||| | ||| || ||||||| ||||| ||| | ||||| || | Sbjct 7050 TGAACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTGGT 7109 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 | |||||||||||||| || ||||||||||||||||| ||| |||||| || || || Sbjct 7110 TACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAACTTG 7167 >seq20382 Length=10560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 || |||||| ||||| | ||| || ||||||| ||||| ||| | ||| | || | Sbjct 3002 TGAACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTGGT 2943 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 | |||||||||||||| || ||||||||||||||||| ||| |||||| || || || Sbjct 2942 TACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTCAACTTG 2885 >seq867 Length=7666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | |||||| |||||||| ||||| |||| ||||| || | Sbjct 1152 TGTACTCAACAATCTCAGTGCACAGGTTGCTGCACTTGATAGTACCCAAGTTCTGCTGGT 1093 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 | |||||||||||||| || ||||| | |||||||| ||| Sbjct 1092 TACTCTTGCTGTTGCAGGCATCCTTAAATAGCATGTAGGGT 1052 >seq4166 Length=1802 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997 ||| || || |||||||||| ||||||||||| ||||| || || ||||||| |||| Sbjct 1745 GGCTGCAGGGCGAGTGCGCAGGTAGTACATGCCTGTCTTCAGCCCGCTGCGCCAGCCGTA 1686 Query 147998 GTCGTGCACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTG 148057 | ||||| ||| | || |||| | || | | |||||||| || | ||| Sbjct 1685 GAAGTGCATCGAGGTCAGCCTGCTGTAGTTAGGCTCCTCTACAAACAGGTTCATGCTCTG 1626 Query 148058 GCTCTGGTCAATGAACGCGCCACGGTCAGC 148087 ||||||||| ||||| ||||| || || || Sbjct 1625 GCTCTGGTCGATGAAGGCGCCTCGATCTGC 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483290342854360