Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17042 156 6e-32 >seq17042 Length=860 Score = 156 bits (172), Expect = 6e-32 Identities = 246/348 (71%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 1455966 GGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCA 1456025 ||| ||| |||||||||| || | || ||||| |||||||| || || ||||||||||| Sbjct 860 GGTGCAACTGCCAGAGGCCCGCTGCTTCTACGGCTTCCAGATTGCTATTGAAAACATCCA 801 Query 1456026 CTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCA 1456085 | || ||||| || ||||| ||||| ||||||||| |||||| | | Sbjct 800 CAGCGAGGTGTACTCTCTGCTGATTGACACACTGGTCAAGGACAACACTGAGAAGAGCAA 741 Query 1456086 CCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAA 1456145 || || || || || || || || | |||| || ||||| |||||| ||| Sbjct 740 GCTGTTCAATGCTATTGAGACTGTCCCTTGTGTGACCAAGAAGGCAAGCTGGGCACTGAG 681 Query 1456146 GTGGATCAACAAGGAGGGCCTCG-ACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GT 1456203 |||| | | || ||| | | | |||||| ||||| | || | |||||| || || Sbjct 680 GTGGTTTGATGAGAAGG---TAGCAAGCTTTGCTGAGCGATTGGTGGCCTTTGCTGCAGT 624 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 || || ||||| ||| ||||| ||||| || |||||||||||||||||||| || | Sbjct 623 AGAAGGTATCTTCTTCAGTGGCAGCTTCTGTGCTATCTTTTGGCTCAAGAAGCGTGGTAT 564 Query 1456264 CATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| || ||| ||||| ||||| || ||||||| || || |||| Sbjct 563 GATGCCTGG-CTTGTGCTTCAGCAATGAGCTTATCAGCCGTGATGAAG 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175728901269418