Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17042 114 2e-20 >seq17042 Length=860 Score = 114 bits (126), Expect = 2e-20 Identities = 203/288 (70%), Gaps = 11/288 (4%) Strand=Plus/Plus Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAA 39735 |||||||| | ||||||||| ||||||||||| || ||| || ||| | ||| ||||| Sbjct 555 CCAGGCATCATACCACGCTTCTTGAGCCAAAAGATAGCA-CAGAAGCTGCCACTGAAGAA 613 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-TA--TCATTATG 39792 ||| ||||||||||| ||||| || || | || ||| | | |||| || | | || Sbjct 614 GATACCTTCTACTGCAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTACCTTCTCATC 673 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 | |||| || ||||||| || ||||| | |||||||| | || || |||||||| Sbjct 674 AAACCACCTCAGTGCCCAGCTTGCCTTCTTGGTCACACAAGGGACAGTCTCAATAGCATT 733 Query 39853 AAAGAGATAATGTTTTTCATCA---CTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || || | || | ||| ||| | || || || ||| || || | |||| || Sbjct 734 GAACAGCT--TGCTCTTC-TCAGTGTTGTCCTTGACCAGTGTGTCAATCAGCAGAGAGTA 790 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 || || |||||||||||||| || ||||| || ||||| || || Sbjct 791 CACCTCGCTGTGGATGTTTTCAATAGCAATCTGGAAGCCGTAGAAGCA 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686723429073960