Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq13161 86.0 7e-12 seq13160 86.0 7e-12 seq13159 86.0 7e-12 >seq13161 Length=3939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 141403 GCAATGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCACTGCAAATCC 141462 ||||| |||||||||| || | || ||| |||| | ||||||| || | | Sbjct 475 GCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGACATGAC 534 Query 141463 AAATAGCCATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAATGCCATATAT 141522 || | |||||| |||| |||||| ||||||||||||| || || |||||||| | Sbjct 535 AATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCCATTTTA 594 Query 141523 TTAAGTTCAGCTGGATTCCATGCAGAAACAATTTGACGCCTATCATTCGGCAGTT 141577 | || |||| |||||||||||| || || || ||| ||||| | ||| ||| Sbjct 595 TCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCTTCAGGCTGTT 649 >seq13160 Length=3470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 141403 GCAATGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCACTGCAAATCC 141462 ||||| |||||||||| || | || ||| |||| | ||||||| || | | Sbjct 2045 GCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGACATGAC 1986 Query 141463 AAATAGCCATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAATGCCATATAT 141522 || | |||||| |||| |||||| ||||||||||||| || || |||||||| | Sbjct 1985 AATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCCATTTTA 1926 Query 141523 TTAAGTTCAGCTGGATTCCATGCAGAAACAATTTGACGCCTATCATTCGGCAGTT 141577 | || |||| |||||||||||| || || || ||| ||||| | ||| ||| Sbjct 1925 TCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCTTCAGGCTGTT 1871 >seq13159 Length=3473 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 141403 GCAATGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCACTGCAAATCC 141462 ||||| |||||||||| || | || ||| |||| | ||||||| || | | Sbjct 2045 GCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGACATGAC 1986 Query 141463 AAATAGCCATTACGCACATTAAACTGATAGAACATATGACAAGGCGGTAATGCCATATAT 141522 || | |||||| |||| |||||| ||||||||||||| || || |||||||| | Sbjct 1985 AATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCCATTTTA 1926 Query 141523 TTAAGTTCAGCTGGATTCCATGCAGAAACAATTTGACGCCTATCATTCGGCAGTT 141577 | || |||| |||||||||||| || || || ||| ||||| | ||| ||| Sbjct 1925 TCTAGATCAGATGGATTCCATGCTGACACTATGATACGTCTATCTTCAGGCTGTT 1871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534054239884280