Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13161 120 2e-22 seq13160 120 2e-22 seq13159 120 2e-22 >seq13161 Length=3939 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||| ||| ||| || ||||| ||| | || || || |||||||||||||| | Sbjct 634 GACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCAT 575 Query 41065 GTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAA 41124 ||||| |||| |||||||| || ||| ||||||||| ||||||||||| |||||||| Sbjct 574 GTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAAC 515 Query 41125 GATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 | | ||| ||||| || || || || || || || || ||||| Sbjct 514 GTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGCTAGTTA 469 >seq13160 Length=3470 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||| ||| ||| || ||||| ||| | || || || |||||||||||||| | Sbjct 1886 GACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCAT 1945 Query 41065 GTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAA 41124 ||||| |||| |||||||| || ||| ||||||||| ||||||||||| |||||||| Sbjct 1946 GTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAAC 2005 Query 41125 GATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 | | ||| ||||| || || || || || || || || ||||| Sbjct 2006 GTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGCTAGTTA 2051 >seq13159 Length=3473 Score = 120 bits (132), Expect = 2e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||| ||| ||| || ||||| ||| | || || || |||||||||||||| | Sbjct 1886 GACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCACCAT 1945 Query 41065 GTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAA 41124 ||||| |||| |||||||| || ||| ||||||||| ||||||||||| |||||||| Sbjct 1946 GTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCATGTCAAATGTATCAAC 2005 Query 41125 GATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 | | ||| ||||| || || || || || || || || ||||| Sbjct 2006 GTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGCTAGTTA 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397351422991945