Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq869 114 2e-20 seq868 114 2e-20 seq9502 93.3 5e-14 seq867 91.5 2e-13 seq866 91.5 2e-13 seq20382 89.7 6e-13 seq17042 89.7 6e-13 >seq869 Length=5680 Score = 114 bits (126), Expect = 2e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 |||||||||| || |||||||| ||| || ||| || | ||||| |||||||| Sbjct 1473 GTCCTCCTTGACATTGAGCAGGAAGCAGCTGCTCAGCTGTGGCCGCGGTGTCCCAGCATT 1532 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 112023 ||| || |||||||| ||||| ||||||| ||| ||| | ||| ||||| | Sbjct 1533 GAACAGAGTTGGTGTAGCGTGTGTGAACATCTTCTGGCTCATGAGGGTGTAGGTCTCTAG 1592 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||||||||||| | | ||| ||||| | ||| |||| ||||| ||||| ||| Sbjct 1593 TGCAGAATCAATGTCCTGCATGTGTATGCCCAGTGCAACCCTCATGATCATGTGGCTTGG 1652 Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACC 112143 | || | | ||||||||| || | || ||| | |||| || || |||| ||| Sbjct 1653 GCGCTCTACCACCTTGCCATCGATGCGCAGCAGGTAGGACCTCTCTAGTGTCTTGAAACC 1712 Query 112144 AAAGTA 112149 |||||| Sbjct 1713 AAAGTA 1718 >seq868 Length=5831 Score = 114 bits (126), Expect = 2e-20 Identities = 175/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 |||||||||| || |||||||| ||| || ||| || | ||||| |||||||| Sbjct 1462 GTCCTCCTTGACATTGAGCAGGAAGCAGCTGCTCAACTGTGGCCGCGGTGTGCCAGCATT 1521 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAA 112023 ||| || |||||||| ||||| ||||||| ||| ||| | ||| ||||||| Sbjct 1522 GAACAGAGTTGGTGTAGCGTGTGTGAACATCTTCTGGCTCATGAGGGTGTAGGTCTCCAG 1581 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT-ACTGTG 112082 |||| |||||||| | | ||||||||| | ||| || | ||||| ||||| ||| || Sbjct 1582 TGCAGAGTCAATGTCCTGCATGTGGATGCCCAGTGCAACTCTCATGATCATGTGACT-TG 1640 Query 112083 GGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGAC 112142 || || | | ||||||||| || | || ||| | |||| || || |||| | Sbjct 1641 GGCGCTCGACTACCTTGCCATCGATGCGCAGCAGGTAGGACCTCTCTAGTGTCTTGAAGC 1700 Query 112143 CAAAGTA 112149 ||||||| Sbjct 1701 CAAAGTA 1707 >seq9502 Length=9919 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 |||| |||||| || || || || | |||| ||||| || || || || |||| || Sbjct 7048 TGTGAACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATTGTGCCTAAGTTCTGCTG 7107 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||||||| ||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 7108 GTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTC 7161 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 111923 AGGAAGCAACTGGACATCTGCGGTCTTGGT-GTACCAGCATTGAAGAGGGTTGGTGTTGC 111981 |||||||| ||| |||||| || |||| |||||||||||||| || |||||||| || Sbjct 8803 AGGAAGCAGCTGCTCATCTGTGG-CTTGACAGTACCAGCATTGAACAGTGTTGGTGTAGC 8861 Query 111982 GTGAATGAACATACCTTGGGA--CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT 112039 || |||| || |||| || |||| || ||| ||||| | || |||||||| Sbjct 8862 ATGTGTGAA-GTA-CTTGAGACTCATCAGGTTGTAGGTCTCAATAGCACTGTCAATGTCA 8919 Query 112040 TCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | ||| ||||| || | ||||| ||||| ||| | |||||| Sbjct 8920 TGCTTGTGTATGCCAATAGAGACCCTCATGATCATATGCTGTGG 8963 >seq867 Length=7666 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | ||| || || || | |||| | ||| || || ||||| |||| ||| Sbjct 1153 GTGTACTCAACAATCTCAGTGCACAGGTTGCTGCACTTGATAGTACCCAAGTTCTGCTGG 1094 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 |||||||| ||||||| |||||||| | ||||||||||| || || ||||| |||| Sbjct 1093 TTACTCTTGCTGTTGCAGGCATCCTTAAATAGCATGTAGGGTGTACCTGTCTCACACTGT 1034 Query 111398 GATTTGAGAATAGCCTTCCA 111417 | || ||||||| ||| Sbjct 1033 GCAACTAGTATAGCCTCCCA 1014 >seq866 Length=7643 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | ||| || || || |||||| | ||| || || |||| |||| ||| Sbjct 1156 GTGTACTCAACAATCTCAGTGCACAAGTTGCTGCACTTGATAGTACCCAGGTTCTGCTGG 1097 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||||| ||||||| ||||||||| | ||||||||||| || || ||||| |||| Sbjct 1096 TTGCTCTTGCTGTTGCAGGCATCCTTGAACAGCATGTAGGGTGTGCCAGTCTCACACTGT 1037 Query 111398 GATTTGAGAATAGCCTTCCA 111417 | || ||||||| ||| Sbjct 1036 GCAACTAGTATAGCCTCCCA 1017 >seq20382 Length=10560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 |||| |||||| || || || || | |||| ||||| || || || || || | || Sbjct 3004 TGTGAACTCTAGTATCTCAGTGCAGAGGTTGCTGCTCTTGATAGTGCCTAAGTTTTGCTG 2945 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||||||| ||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 2944 GTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTAGGGTGTGCCAGTCTC 2891 >seq17042 Length=860 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||| ||||| ||| ||||| ||||| |||||| | || Sbjct 497 GGCAAAGTCTGTGTGCAGACCTTCATCACGGCTGATAAGCTCATTGCTGAAGCACAAGCC 556 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| |||||||| | |||| | ||||| ||||| || ||||||||| Sbjct 557 AGGCATCATACCACGCTTCTTGAGCCAAAAGATAGCACAGAAGCTGCCACTGAAGAAGAT 616 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG-GAGCGAGACTTTGCATCAA 122836 ||| || || ||||| || | | || || || ||| || | ||| |||||| Sbjct 617 ACCTTCTACTGCAGCAAAGGCCACCAATCGCTCAGCAAAGCTTGCTA-CCTTCTCATCAA 675 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 |||| ||| |||||| | |||||||| | ||| || ||||| Sbjct 676 ACCACCTCAGTGCCCAGCTTGCCTTCTTGGTCACACAAGGGACAGT 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627862517714400