Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq17042 123 3e-23 seq869 84.2 3e-11 >seq17042 Length=860 Score = 123 bits (136), Expect = 3e-23 Identities = 183/257 (71%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 94700 CTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGG 94759 ||||||||| |||| || | || || | || || || ||| | ||||| || Sbjct 753 CTGAGAAGAGCAAGCTGTTCAATGCTATTGAGACTGTCCCTTGTGTGACCAAGAAGGCAA 694 Query 94760 ATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 ||||| ||| |||||||||| | || || || | |||||||||||| | | || Sbjct 693 GCTGGGCACTGAGGTGGTTTGATGAGAAGGTAGCAAGC-TTTGCTGAGCGATTGGTGGCC 635 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| || || |||||||||||| ||| |||||| ||||| | |||||||||| Sbjct 634 TTTGCTGCAGTAGAAGGTATCTTCTTCAGTGGCAGCTTCTGTGCTATCTTTTGGCTCAAG 575 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||| ||| | ||||| || | |||||| ||| ||||||||| ||||| || || Sbjct 574 AAGCGTGGTATGATGCCTGGCTTGTGCTTCAGCAATGAGCTTATCAGCCGTGATGAAGGT 515 Query 94939 CTCCACCAAGAGTTTGC 94955 || ||| ||| ||||| Sbjct 514 CTGCACACAGACTTTGC 498 >seq869 Length=5680 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGATG 104215 || |||||| |||| || || |||| | ||| || | || ||||||| || | Sbjct 1718 TACTTTGGTTTCAAGACACTAGAGAGGTCCTACCTGCTGCGCATCGATGGCAAGGTGGTA 1659 Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 || |||| ||||| ||||| | || || | || || || | | ||||||||| Sbjct 1658 GAGCGCCCAAGCCACATGATCATGAGGGTTGCACTGGGCATACACATGCAGGACATTGAT 1599 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 104335 |||| | ||||| ||| | ||| ||| ||||||| ||||| |||||||| Sbjct 1598 TCTGCACTAGAGACCTACACCCTCATGAGCCAGAAGATGTTCACACACGCTACACCAACT 1539 Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 || ||||||||||| ||||| | || || || ||| |||||||| || |||| Sbjct 1538 CTGTTCAATGCTGGGACACCGCGGCCACAGCTGAGCAGCTGCTTCCTGCTCAATGTCAAG 1479 Query 104396 GAGGAC 104401 |||||| Sbjct 1478 GAGGAC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583103399782360