Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4375 145 2e-29 seq2369 123 8e-23 seq1251 118 3e-21 seq20785 93.3 1e-13 seq18584 93.3 1e-13 seq17201 93.3 1e-13 seq17200 93.3 1e-13 seq13161 86.0 2e-11 seq13160 86.0 2e-11 seq13159 86.0 2e-11 >seq4375 Length=1004 Score = 145 bits (160), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||| || || || || |||||||| | ||| || ||||| Sbjct 11 AGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCC 70 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| ||||| ||||| ||||| || || || || || ||| Sbjct 71 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 130 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || ||||| | |||||||| ||||| || || || | ||| Sbjct 131 TGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTC 190 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| ||||| || || || |||||||| Sbjct 191 TTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 123 bits (136), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || ||||| ||| || ||||| ||||| || Sbjct 360 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTC 301 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 300 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 241 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || ||||| | |||||||| || Sbjct 240 TGGGATGCCCTCCTTGTCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTC 181 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || | ||||| || || || Sbjct 180 AACATCAAGAGTGATGGTCTTGCCAGTCAG 151 >seq1251 Length=1604 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || || || || ||| || || || ||||| || Sbjct 802 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTC 861 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 862 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 921 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || || ||||| | |||||||| || Sbjct 922 TGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTC 981 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || | ||||| || || || Sbjct 982 AACATCAAGAGTGATGGTCTTGCCAGTCAG 1011 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || || || || || ||| || ||||| || || ||||| Sbjct 322 ACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGA 381 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| ||||| || || ||||||||||| ||||| ||||| ||||| || Sbjct 382 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 441 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || || || || ||||| | |||||||| ||||| Sbjct 442 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAAC 501 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || ||||| | ||||| || || || Sbjct 502 ATCCAGTGTGATGGTCTTGCCAGTCAG 528 >seq20785 Length=6495 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/212 (72%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 ||||||| || |||| ||||||||||||||| |||||||| ||||||| ||| ||| Sbjct 3944 ATACCATCAGCATCAATATCAAATGATACTTCGATCTGTGGTACACCTCTTGGTGCAGGT 4003 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAG--TTCTTGCTCTCT 183045 || || ||| || | |||||||||||| | |||||||| || ||| | |||| Sbjct 4004 GGTATGCCAACTAGATCAAATTCACCTAAACTCTTATTATCAGCAGCCATCTCACGCTCT 4063 Query 183046 CGCCTTCATATAC-TTGAATAGTAACTG-CTGGCTGATTATCACTATAAGTAGAAAAAAC 183103 | ||| | ||| |||| ||| || || ||| ||||||| ||||| || || Sbjct 4064 C-CCTGTA-GTACTTTGATCTGTACTTGACT--CTGGCTATCACTTGCTGTAGAGAATAC 4119 Query 183104 TTGCTTTTTATTAATAGGAATAGTTGAATTTC 183135 |||| || ||| |||| ||||| | ||||| Sbjct 4120 TTGCACCTTCTTAGTAGGGATAGTAGTATTTC 4151 >seq18584 Length=6491 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/212 (72%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 ||||||| || |||| ||||||||||||||| |||||||| ||||||| ||| ||| Sbjct 2548 ATACCATCAGCATCAATATCAAATGATACTTCGATCTGTGGTACACCTCTTGGTGCAGGT 2489 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAG--TTCTTGCTCTCT 183045 || || ||| || | |||||||||||| | |||||||| || ||| | |||| Sbjct 2488 GGTATGCCAACTAGATCAAATTCACCTAAACTCTTATTATCAGCAGCCATCTCACGCTCT 2429 Query 183046 CGCCTTCATATAC-TTGAATAGTAACTG-CTGGCTGATTATCACTATAAGTAGAAAAAAC 183103 | ||| | ||| |||| ||| || || ||| ||||||| ||||| || || Sbjct 2428 C-CCTGTA-GTACTTTGATCTGTACTTGACT--CTGGCTATCACTTGCTGTAGAGAATAC 2373 Query 183104 TTGCTTTTTATTAATAGGAATAGTTGAATTTC 183135 |||| || ||| |||| ||||| | ||||| Sbjct 2372 TTGCACCTTCTTAGTAGGGATAGTAGTATTTC 2341 >seq17201 Length=7759 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/212 (72%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 ||||||| || |||| ||||||||||||||| |||||||| ||||||| ||| ||| Sbjct 6031 ATACCATCAGCATCAATATCAAATGATACTTCGATCTGTGGTACACCTCTTGGTGCAGGT 6090 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAG--TTCTTGCTCTCT 183045 || || ||| || | |||||||||||| | |||||||| || ||| | |||| Sbjct 6091 GGTATGCCAACTAGATCAAATTCACCTAAACTCTTATTATCAGCAGCCATCTCACGCTCT 6150 Query 183046 CGCCTTCATATAC-TTGAATAGTAACTG-CTGGCTGATTATCACTATAAGTAGAAAAAAC 183103 | ||| | ||| |||| ||| || || ||| ||||||| ||||| || || Sbjct 6151 C-CCTGTA-GTACTTTGATCTGTACTTGACT--CTGGCTATCACTTGCTGTAGAGAATAC 6206 Query 183104 TTGCTTTTTATTAATAGGAATAGTTGAATTTC 183135 |||| || ||| |||| ||||| | ||||| Sbjct 6207 TTGCACCTTCTTAGTAGGGATAGTAGTATTTC 6238 >seq17200 Length=7760 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/212 (72%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 182928 ATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGTGGCATTGGT 182987 ||||||| || |||| ||||||||||||||| |||||||| ||||||| ||| ||| Sbjct 6032 ATACCATCAGCATCAATATCAAATGATACTTCGATCTGTGGTACACCTCTTGGTGCAGGT 6091 Query 182988 GGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAG--TTCTTGCTCTCT 183045 || || ||| || | |||||||||||| | |||||||| || ||| | |||| Sbjct 6092 GGTATGCCAACTAGATCAAATTCACCTAAACTCTTATTATCAGCAGCCATCTCACGCTCT 6151 Query 183046 CGCCTTCATATAC-TTGAATAGTAACTG-CTGGCTGATTATCACTATAAGTAGAAAAAAC 183103 | ||| | ||| |||| ||| || || ||| ||||||| ||||| || || Sbjct 6152 C-CCTGTA-GTACTTTGATCTGTACTTGACT--CTGGCTATCACTTGCTGTAGAGAATAC 6207 Query 183104 TTGCTTTTTATTAATAGGAATAGTTGAATTTC 183135 |||| || ||| |||| ||||| | ||||| Sbjct 6208 TTGCACCTTCTTAGTAGGGATAGTAGTATTTC 6239 >seq13161 Length=3939 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 390772 ATATATGGGATGGAAACGGTTCAAGAGATTTTTTAGATAGTAGAGGCTTAACTAATTTAG 390831 ||||||||||||| || ||| ||||| || ||||||| ||| | || || || Sbjct 1032 ATATATGGGATGGTAATGGTAGTAGAGAGTTCTTAGATAAACTAGGACTTACACATAGAG 973 Query 390832 AAGAAGATGATTTAGGGCCAGTATATGGACATCAATGGAGACATTTTAATGCACCATATA 390891 |||||| |||| | || || |||||||| |||||||| | |||||| ||| |||| Sbjct 972 AAGAAGGTGATCTTGGTCCTGTATATGGTTATCAATGGCGTCATTTTGGTGCTAAATATG 913 Query 390892 CAAACTGTG-AAACAGACTATACAGATAAAGGTGTAGATCAATTAG 390936 | | || | |||||||| || | ||||||| |||||||||| Sbjct 912 TTGA-TATGCATACAGACTACACTGGCCAAGGTGTTGATCAATTAG 868 >seq13160 Length=3470 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 390772 ATATATGGGATGGAAACGGTTCAAGAGATTTTTTAGATAGTAGAGGCTTAACTAATTTAG 390831 ||||||||||||| || ||| ||||| || ||||||| ||| | || || || Sbjct 1488 ATATATGGGATGGTAATGGTAGTAGAGAGTTCTTAGATAAACTAGGACTTACACATAGAG 1547 Query 390832 AAGAAGATGATTTAGGGCCAGTATATGGACATCAATGGAGACATTTTAATGCACCATATA 390891 |||||| |||| | || || |||||||| |||||||| | |||||| ||| |||| Sbjct 1548 AAGAAGGTGATCTTGGTCCTGTATATGGTTATCAATGGCGTCATTTTGGTGCTAAATATG 1607 Query 390892 CAAACTGTG-AAACAGACTATACAGATAAAGGTGTAGATCAATTAG 390936 | | || | |||||||| || | ||||||| |||||||||| Sbjct 1608 TTGA-TATGCATACAGACTACACTGGCCAAGGTGTTGATCAATTAG 1652 >seq13159 Length=3473 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 390772 ATATATGGGATGGAAACGGTTCAAGAGATTTTTTAGATAGTAGAGGCTTAACTAATTTAG 390831 ||||||||||||| || ||| ||||| || ||||||| ||| | || || || Sbjct 1488 ATATATGGGATGGTAATGGTAGTAGAGAGTTCTTAGATAAACTAGGACTTACACATAGAG 1547 Query 390832 AAGAAGATGATTTAGGGCCAGTATATGGACATCAATGGAGACATTTTAATGCACCATATA 390891 |||||| |||| | || || |||||||| |||||||| | |||||| ||| |||| Sbjct 1548 AAGAAGGTGATCTTGGTCCTGTATATGGTTATCAATGGCGTCATTTTGGTGCTAAATATG 1607 Query 390892 CAAACTGTG-AAACAGACTATACAGATAAAGGTGTAGATCAATTAG 390936 | | || | |||||||| || | ||||||| |||||||||| Sbjct 1608 TTGA-TATGCATACAGACTACACTGGCCAAGGTGTTGATCAATTAG 1652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514835266900967