Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq13161 82.4 6e-11 seq13160 82.4 6e-11 seq13159 82.4 6e-11 >seq13161 Length=3939 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 111811 CTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGC 111870 |||||||||||||| || ||||||||||| || |||||||| | | |||||| | Sbjct 466 CTGTAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATT 525 Query 111871 TGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAAT 111930 |||||||| | || | | | ||||| || ||||| | | |||||| || |||||| Sbjct 526 TGACATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAAT 585 Query 111931 GCCAT 111935 ||||| Sbjct 586 GCCAT 590 >seq13160 Length=3470 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111811 CTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGC 111870 |||||||||||||| || ||||||||||| || |||||||| | | |||||| | Sbjct 2054 CTGTAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATT 1995 Query 111871 TGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAAT 111930 |||||||| | || | | | ||||| || ||||| | | |||||| || |||||| Sbjct 1994 TGACATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAAT 1935 Query 111931 GCCAT 111935 ||||| Sbjct 1934 GCCAT 1930 >seq13159 Length=3473 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111811 CTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGC 111870 |||||||||||||| || ||||||||||| || |||||||| | | |||||| | Sbjct 2054 CTGTAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATT 1995 Query 111871 TGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAAT 111930 |||||||| | || | | | ||||| || ||||| | | |||||| || |||||| Sbjct 1994 TGACATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAAT 1935 Query 111931 GCCAT 111935 ||||| Sbjct 1934 GCCAT 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391842472866007