Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12022 111 2e-19 seq12021 102 9e-17 seq17042 82.4 8e-11 >seq12022 Length=1470 Score = 111 bits (122), Expect = 2e-19 Identities = 247/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 79050 GCACAGCGATG-CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 ||||| || || ||||||||||||| ||| ||| || | ||||| ||| | | | Sbjct 846 GCACAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTAGTGTACTCCACAACCT 787 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 | ||||| || |||||| ||||| | ||||| ||||||||||||| | || | Sbjct 786 CACAGCACAGGTTGCTGCTCTTGATTGTGCCCAAGTTCTGCTGGTTGCTCTTCCCATTGC 727 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGT 79228 |||| |||||||| |||||| || || || ||||||| ||| | || | | || Sbjct 726 AGGCATCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGGGCATCTAGGATCCTGT 667 Query 79229 CCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGT 79288 ||| | |||| | || | || | || |||| ||| |||| || Sbjct 666 ACCACAAGTCCTGAGCTCTCACGCGGCGCACAAACTTGCCCTCTGCTTCGTAGCGAGTGT 607 Query 79289 ACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACA 79348 ||| ||| | |||| | | || || || | || || ||||||| ||| ||||||| Sbjct 606 ACAGCTCTTCGAAATCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCACTGGTGTGGGCACA 547 Query 79349 TCAGGTGCCAGTCCTCGTC--CTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| | |||||| |||| ||||| || || |||||||||||| |||||||||| Sbjct 546 TCAAGCACCAGTCTCCGTCTGCTTCT--ACGCGCTGCATGAAGAGGTCTGGGATCCACA- 490 Query 79407 GGCCGT 79412 |||||| Sbjct 489 GGCCGT 484 >seq12021 Length=1470 Score = 102 bits (112), Expect = 9e-17 Identities = 245/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 79050 GCACAGCGATG-CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 ||||| || || ||||||||||||| ||| ||| || | ||| | ||| | | | Sbjct 846 GCACAACGCTGGCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCT 787 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 | ||||| ||| |||||| ||||| | ||| | ||||||||||||| | || | Sbjct 786 CACAGCACAGATTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGC 727 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGT 79228 ||||||||||||| |||||| || || || ||||||| |||| | || | | || Sbjct 726 AGGCGTCCTTGTACATCATGTAGGGGGTGCCTGTCTCAATCTGAGCATCTAGTATTCTGT 667 Query 79229 CCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGT 79288 ||| | || | || || || | || |||| ||| |||| || Sbjct 666 ACCACAGATCTTGAGCTCGCACGCGGCGCACAAACTTGCCCTCTGCTTCGTAGCGAGTGT 607 Query 79289 ACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACA 79348 ||| | | | ||| | | || || || | || || ||||||| ||| ||||||| Sbjct 606 ACAGCGCCTCGAACTCTTTGCCCCAGCAGTCTGCAAGCCCAGGGCACTGGTGTGGGCACA 547 Query 79349 TCAGGTGCCAGTCCTCGTC--CTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 ||| | |||||| |||| ||||| || || |||||||||||| |||||||||| Sbjct 546 TCAAGCACCAGTCTCCGTCTGCTTCT--ACGCGCTGCATGAAGAGGTCTGGGATCCACA- 490 Query 79407 GGCCGT 79412 |||||| Sbjct 489 GGCCGT 484 >seq17042 Length=860 Score = 82.4 bits (90), Expect = 8e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || ||||| ||||||||| |||| ||||||||||| || ||||| Sbjct 637 GCCTTTGC-TGCAGTAGAAGGTATCTTCTTCAGTGGCAGCTTCTGTGCTATCTTTTGGCT 579 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| |||||||| | ||||| ||| || | ||| ||| ||||| || ||| || || Sbjct 578 CAAGAAGCGTGGTATGATGCCTGGCTTGTGCTTCAGCAATGAGCTTATCAGCCGTGATGA 519 Query 60110 GGGCCTCCA 60118 || || || Sbjct 518 AGGTCTGCA 510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548376773726160