Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1251 167 3e-36 seq4375 163 3e-35 seq2369 143 3e-29 seq18313 104 3e-17 seq18312 104 3e-17 seq12021 86.0 7e-12 >seq1251 Length=1604 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || |||||||| |||||| || | Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCT 1439 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||| || ||||||||||||||||| || || || |||||| Sbjct 1438 GACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1379 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || || || | || || || Sbjct 1378 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAAC 1319 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| || || || ||||||| || || || Sbjct 1318 ATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCGTGGAGG 1272 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || |||||||| |||||| || ||| | |||| || ||||| Sbjct 1011 CTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGAAG 952 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||||||||||||||| || || || |||||||||||||| || |||||||| Sbjct 951 CAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGC 892 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||||| || || || | |||||||| |||| ||||| ||| || Sbjct 891 AAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGCACACTG 832 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||||||| || || || Sbjct 831 CACCTGGTGCTGCGTCTGCGTGGAGG 806 Score = 129 bits (142), Expect = 7e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || || || |||||| || ||| | |||| || ||||| Sbjct 528 CTGACTGGCAAGACCATCACACTGGATGTTGAGCCATCTGACACTATTGACAACGTGAAG 469 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || |||||||||||||| || || || |||||||||||||| || |||||||| Sbjct 468 CAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGC 409 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||||| || || || | ||||| || | || ||||| ||| || Sbjct 408 AAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACACTG 349 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || |||||||||| || || Sbjct 348 CACCTGGTGCTGCGTCTTCGTGGAGG 323 >seq4375 Length=1004 Score = 163 bits (180), Expect = 3e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || || ||||| ||||| || ||||| || ||||||||||| || ||||| || |||||| Sbjct 228 ACAATCATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAG 169 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 || ||| | |||| || ||||| || ||||||||||||||||| || || || Sbjct 168 CCATCTGACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCT 109 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 |||||||||||||| || |||||||| ||||| || ||||||| || || || | || Sbjct 108 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGAT 49 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 || || |||| ||||| |||||| || || || ||||||| || Sbjct 48 TACAACATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCG 2 >seq2369 Length=1144 Score = 143 bits (158), Expect = 3e-29 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || |||||||| |||||| || ||| | |||| || ||||| Sbjct 151 CTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGAAG 210 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || |||||||||||||| || || || |||||||||||||| || |||||||| Sbjct 211 CAGAAGATNCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGC 270 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||||| || || || | |||||||| | || ||||| |||||| Sbjct 271 AAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATTCAGAAGGAGAGCACTCTG 330 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||||||| || || || Sbjct 331 CACCTGGTGCTGCGTCTGCGTGGAGG 356 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || ||||| || |||||| || ||| | |||| || ||||| Sbjct 617 CTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACGTGAAG 676 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||||||||||||||| || || || |||||||||||||| || || ||||| Sbjct 677 CAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTGGC 736 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||||| || || || | ||||| || | || ||||| ||| || Sbjct 737 AAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACACTG 796 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || |||||||||| || || Sbjct 797 CACCTGGTGCTGCGTCTTCGTGGAGG 822 >seq18313 Length=2265 Score = 104 bits (114), Expect = 3e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || || ||||||||||| || || ||||| ||| Sbjct 2240 AAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGCAGCGTCTCATCTTCGCTGGCAAG 2181 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || |||||||||| || || || ||| ||||| || |||| ||||| |||||| || Sbjct 2180 CAGCTCGAGGATGGCCGCACTCTGAGC-GACTACAACATCCAGAAGGAGAGCACTCTGCA 2122 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||||| || || || Sbjct 2121 CCTGGTGCTGCGTCTCCGTGGAGG 2098 >seq18312 Length=2245 Score = 104 bits (114), Expect = 3e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || || ||||||||||| || || ||||| ||| Sbjct 2235 AAGATCCAGGACAAGGAGGGCATCCCCCCTGATCAGCAGCGTCTCATCTTCGCTGGCAAG 2176 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || |||||||||| || || || ||| ||||| || |||| ||||| |||||| || Sbjct 2175 CAGCTCGAGGATGGCCGCACTCTGAGC-GACTACAACATCCAGAAGGAGAGCACTCTGCA 2117 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||||| || || || Sbjct 2116 CCTGGTGCTGCGTCTCCGTGGAGG 2093 >seq12021 Length=1470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 ||||| |||||||| |||||||| || || || |||| || | || ||||| | Sbjct 835 GCCAGGTTGCACACAGCCACCTCCTCTGCGCTGGTGTACTCCACAACCTCACAGCACAGA 776 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || ||| ||||| |||||||||| |||||| ||| | ||||| ||||||||| Sbjct 775 TTGCTGCTCTTGATTGTGCCCAGGTTTTGCTGGTTGCTCTTCCCATTGCAGGCGTCCTTG 716 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 || |||||| ||||| || ||||| | ||| Sbjct 715 TACATCATGTAGGGGGTGCCTGTCTCAATCTG 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570156494609680