Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4375 118 7e-22 seq2369 105 4e-18 seq1251 105 4e-18 >seq4375 Length=1004 Score = 118 bits (130), Expect = 7e-22 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || |||||||||||||| || ||||| ||||| || ||||| || Sbjct 5 AGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGG 64 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 65 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 124 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | ||| ||||| ||| || || | || Sbjct 125 TTGTCCTGAATCTTCTG-CTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGT 183 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGATTG 34714 || || || ||||| | || ||||| || ||||||||| ||| ||| Sbjct 184 GATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATGATTGTTTG 231 >seq2369 Length=1144 Score = 105 bits (116), Expect = 4e-18 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || |||||||||||||| ||||||||||| || || || || || Sbjct 347 AGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGACAGAGTGCGG 288 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 287 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 228 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 ||||| ||||| || || Sbjct 227 TTGTCCTGNATCTTCTGCTT 208 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||||| || || ||||||||||| |||||||| || || || Sbjct 822 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 763 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || || || || || | |||||| ||||| || || Sbjct 762 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 703 Query 34600 ACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 702 ATGCCCTCCTTGTC 689 >seq1251 Length=1604 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || |||||||||||||| || ||||| ||||| || || || || Sbjct 1281 AGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGACAGAGTGCGG 1340 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||| ||||| || || | |||||| Sbjct 1341 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 1400 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||||| || || ||| | || ||||| ||| || || | || Sbjct 1401 TTGTCCTGAATCTTCTG-CTTCACGTTGTCGATGGTGTCAGATGGCTCAACATCAAGAGT 1459 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| ||||| | || || ||||| ||||||||| Sbjct 1460 GATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATG 1499 Score = 102 bits (112), Expect = 5e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||||| || || ||||||||||| |||||||| || || || Sbjct 323 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 382 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| || || || ||||| || | |||||| ||||| || || Sbjct 383 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 442 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | ||||||||||| |||||| || || Sbjct 443 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 471 Score = 95.1 bits (104), Expect = 8e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || || ||||||||||| || |||||||| || || || || || Sbjct 815 AGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGACAGAGTGCGG 874 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 875 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 934 Query 34609 TTGTC 34613 ||||| Sbjct 935 TTGTC 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314646789626237