Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1251 129 5e-25 seq4375 113 4e-20 seq2369 96.9 3e-15 >seq1251 Length=1604 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||||||||| | || |||||||| || || || || Sbjct 1499 CATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATC 1440 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || ||||| ||||| || ||||| ||||| || || Sbjct 1439 TGACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 1380 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || || | || | ||||||||||| Sbjct 1379 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAA 1320 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| || | || |||| ||||| |||| || ||||| Sbjct 1319 CATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCGTGGAGGCAT 1269 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27007 CTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCA 27066 ||||||| |||||| | || || || || || || || || ||| | ||||| | || | Sbjct 530 CTCTGACTGGCAAGACCATCACACTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 471 Query 27067 AACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCG 27126 | || || || || ||||| || ||||| ||||| || || |||||| | || | || | Sbjct 470 AGCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 411 Query 27127 GCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 |||| || | || || | || | || || ||||||||||| |||||| Sbjct 410 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAG 358 >seq4375 Length=1004 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || ||||| || || || || || Sbjct 223 CATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAGCCATC 164 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || || ||||| ||||| || ||||| ||||| || || Sbjct 163 TGACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 104 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || | || || | || | || |||||||| Sbjct 103 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAA 44 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| || |||||| || | || |||| ||||| |||| Sbjct 43 CATCCAGAAGGAGAGCACTCTGCACCTGGTGCTGCGTCTGCG 2 >seq2369 Length=1144 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27007 CTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCA 27066 ||||||| |||||| | || ||||| || || || || || ||| | ||||| | || | Sbjct 615 CTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 674 Query 27067 AACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCG 27126 | || || ||||| ||||| || ||||| ||||| || || |||||| | || | ||| | Sbjct 675 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTG 734 Query 27127 GCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 |||| || | || || | || | || || ||||||||||| |||||| Sbjct 735 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAG 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434801031833280