Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq13161 87.8 2e-12 seq13160 87.8 2e-12 seq13159 87.8 2e-12 >seq13161 Length=3939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 21202 GATCGACGTCAAATCGTTTCAGCATGGAATCCAGCTGAAATCAATCAAATGGCATTACCG 21261 ||| ||||| || || ||||||||||||||| |||| | || |||||||||| || Sbjct 638 GATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCA 579 Query 21262 CCCTGTCATATGTTCTATCAGTTTAATGTGCGTAATGGT-TATCTTGATTTACAATGGTA 21320 || ||||||||||||| |||||| |||| ||||||| || | || | ||| ||| Sbjct 578 CCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCATGT-CAAATGTA 520 Query 21321 CCAAAGAAGTGTAGATGTTTTCTTGGGATTGCCATTCAACATTGC 21365 ||| | |||| ||| | | || |||||||||| ||||| Sbjct 519 TCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGC 475 >seq13160 Length=3470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 21202 GATCGACGTCAAATCGTTTCAGCATGGAATCCAGCTGAAATCAATCAAATGGCATTACCG 21261 ||| ||||| || || ||||||||||||||| |||| | || |||||||||| || Sbjct 1882 GATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCA 1941 Query 21262 CCCTGTCATATGTTCTATCAGTTTAATGTGCGTAATGGT-TATCTTGATTTACAATGGTA 21320 || ||||||||||||| |||||| |||| ||||||| || | || | ||| ||| Sbjct 1942 CCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCATGT-CAAATGTA 2000 Query 21321 CCAAAGAAGTGTAGATGTTTTCTTGGGATTGCCATTCAACATTGC 21365 ||| | |||| ||| | | || |||||||||| ||||| Sbjct 2001 TCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGC 2045 >seq13159 Length=3473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 21202 GATCGACGTCAAATCGTTTCAGCATGGAATCCAGCTGAAATCAATCAAATGGCATTACCG 21261 ||| ||||| || || ||||||||||||||| |||| | || |||||||||| || Sbjct 1882 GATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAATGGCATTGCCA 1941 Query 21262 CCCTGTCATATGTTCTATCAGTTTAATGTGCGTAATGGT-TATCTTGATTTACAATGGTA 21320 || ||||||||||||| |||||| |||| ||||||| || | || | ||| ||| Sbjct 1942 CCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCATGT-CAAATGTA 2000 Query 21321 CCAAAGAAGTGTAGATGTTTTCTTGGGATTGCCATTCAACATTGC 21365 ||| | |||| ||| | | || |||||||||| ||||| Sbjct 2001 TCAACGTAGTGCTGATATGGGGCTTGGTGTGCCATTCAATATTGC 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534524512940960