Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq4165 89.7 2e-13 seq6396 86.0 3e-12 >seq4165 Length=7783 Score = 89.7 bits (98), Expect = 2e-13 Identities = 198/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 66222 CAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTAC 66281 || || || ||||||| |||| || ||| ||||| ||||| | || || |||| ||| Sbjct 1096 CAAAAAGCAGGTGGCACAGCTGTCTTCATTGACGCAGAGCATGCACTCGATCCTGTCTAC 1155 Query 66282 GCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAG 66341 | || | || || || | || |||| || | |||||| |||| ||| ||| Sbjct 1156 AGCGCTGCAATAGGCGTCAACATGGAGGCCCTCTATGTAGCTCAGCCTGACAGTGGTGAG 1215 Query 66342 CAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATC--GTCGTCG 66399 ||||| || || || || || || || | | ||| |||| || || || | Sbjct 1216 CAGGCTCTTGACATTGTAGAGACGCTTGTGAGGAGCGGCT--CTGTTGATGTGGTTGTTG 1273 Query 66400 TTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTC 66459 |||||||||| || || || ||||| ||||| ||||| || || ||||| ||||| | Sbjct 1274 TTGACTCTGTTGCAGCACTTGTGCCACGCGCTGAGCTTGATGGTGACATGGGGGATCACC 1333 Query 66460 ACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCAC 66514 | || | ||||| || ||||| ||| || || | | |||||||| || || Sbjct 1334 ATGTGGCGCTGCAGGCACGCCTTATGAGCCAAGCACTCAGGAAGCTCACAGGTAC 1388 >seq6396 Length=4265 Score = 86.0 bits (94), Expect = 3e-12 Identities = 197/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 66222 CAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTAC 66281 || || || ||||||| || | || ||| || || |||||| | || || |||| ||| Sbjct 3191 CAAAAAGCAGGTGGCACAGCAGTCTTCATTGATGCAGAGCACGCTCTCGATCCTGTATAC 3132 Query 66282 GCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAG 66341 || | || || || | || ||| || | |||||| |||| ||| ||| Sbjct 3131 AGTGCTGCAATAGGCGTCAACATGGAGGCCCTGTATGTAGCTCAGCCTGACAGTGGTGAG 3072 Query 66342 CAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATC--GTCGTCG 66399 ||||| || || || || || ||| || | | ||| |||| || || || | Sbjct 3071 CAGGCTCTAGACATTGTGGAGACCCTTGTGAGGAGCGGCT--CTGTGGATGTGGTTGTTG 3014 Query 66400 TTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTC 66459 ||||||||||||| || || ||||| ||||| ||||| || || ||||| ||||| | Sbjct 3013 TTGACTCTGTGGCAGCACTTGTGCCACGCGCTGAGCTTGATGGTGACATGGGGGATCACC 2954 Query 66460 ACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCAC 66514 | || | ||||| || ||||| ||| || || || | || ||||| || || Sbjct 2953 ATGTGGCGCTGCAAGCACGCCTTATGAGCCAAGCACTGAGAAAACTCACAGGTAC 2899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240896599583700