Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq13161 87.8 1e-12 seq13160 87.8 1e-12 seq13159 87.8 1e-12 >seq13161 Length=3939 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 126174 TAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGA 126233 ||||| ||||||||||| || ||||| | ||||||||||| | |||||| | |||| Sbjct 469 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 528 Query 126234 CAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCC 126293 || |||| ||| | || || || ||| | | | || || ||||| |||||| Sbjct 529 CATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCC 588 Query 126294 ATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTC 126339 ||| ||| | |||| |||||||||||||| || ||| ||||| Sbjct 589 ATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTC 634 >seq13160 Length=3470 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 126174 TAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGA 126233 ||||| ||||||||||| || ||||| | ||||||||||| | |||||| | |||| Sbjct 2051 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 1992 Query 126234 CAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCC 126293 || |||| ||| | || || || ||| | | | || || ||||| |||||| Sbjct 1991 CATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCC 1932 Query 126294 ATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTC 126339 ||| ||| | |||| |||||||||||||| || ||| ||||| Sbjct 1931 ATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTC 1886 >seq13159 Length=3473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 126174 TAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTCTTTGATATAATTGA 126233 ||||| ||||||||||| || ||||| | ||||||||||| | |||||| | |||| Sbjct 2051 TAACTAGCAATATTGAATGGCACACCAAGCCCCATATCAGCACTACGTTGATACATTTGA 1992 Query 126234 CAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCC 126293 || |||| ||| | || || || ||| | | | || || ||||| |||||| Sbjct 1991 CATGACAATTCACCATTAGCAACATAGAACTGACAGAACATATGACATGGTGGCAATGCC 1932 Query 126294 ATTGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTC 126339 ||| ||| | |||| |||||||||||||| || ||| ||||| Sbjct 1931 ATTTTATCTAGATCAGATGGATTCCATGCTGACACTATGATACGTC 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408490891248923