Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1251 176 1e-38 seq4375 163 7e-35 seq2369 147 5e-30 seq18313 120 7e-22 seq18312 102 2e-16 >seq1251 Length=1604 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| |||||| ||| || |||||||| ||||| | || Sbjct 1274 TCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGACAG 1333 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| |||||||| || || || |||||||| || | Sbjct 1334 AGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGAT 1393 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| || |||||||| |||||||||||||| ||||| || Sbjct 1394 GCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACATC 1453 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || || || || ||||| ||||| | |||||| Sbjct 1454 AAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| || ||| ||| || ||||||||||| || | || Sbjct 808 TCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGACAG 867 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| || ||||| || || || |||||||| || | Sbjct 868 AGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGAT 927 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| || |||||||| || || |||||||| ||||| || Sbjct 928 GCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATC 987 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAG 211095 |||||||| ||||| || || |||| Sbjct 988 AAGAGTGATGGTCTTGCCAGTCAGAG 1013 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || ||||| || ||| ||| || || ||||| || || | || Sbjct 325 TCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAG 384 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| || ||||| || || || |||||||| || | Sbjct 385 AGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGAT 444 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || |||||||| || || |||||||| ||||| || Sbjct 445 GCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATC 504 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAG 211095 || ||||| ||||| || || |||| Sbjct 505 CAGTGTGATGGTCTTGCCAGTCAGAG 530 >seq4375 Length=1004 Score = 163 bits (180), Expect = 7e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||| ||| || |||||||| ||||| | || || | ||||| Sbjct 11 AGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCC 70 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || |||||||| || | || ||||||||| Sbjct 71 TCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 130 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| || || |||||||| ||||| || |||||||| ||| Sbjct 131 TGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTC 190 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 191 TTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| |||||| ||| || || |||||||| || | || Sbjct 354 TCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGACAG 295 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| || ||||| || || || |||||||| || | Sbjct 294 AGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGAT 235 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| || |||||||| || || |||||||| ||||| || Sbjct 234 GCCCTCCTTGTCCTGNATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATC 175 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAG 211095 |||||||| ||||| || || |||| Sbjct 174 AAGAGTGATGGTCTTGCCAGTCAGAG 149 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || ||||| || ||| ||| || || ||||| || || | || Sbjct 820 TCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAG 761 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| |||||||| || || || |||||||| || | Sbjct 760 AGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGAT 701 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| || |||||||| || || |||||||| ||||| || Sbjct 700 GCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATC 641 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAG 211095 |||||||| ||||| || || |||| Sbjct 640 CAGAGTGATGGTCTTGCCAGTCAGAG 615 >seq18313 Length=2265 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| |||||| ||| || |||||||| || || || Sbjct 2100 TCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAG 2159 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| |||||||| || || || || ||||| || | Sbjct 2160 AGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGAT 2219 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 || ||||||||||||||||| || || ||||| || ||||||||| Sbjct 2220 GCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCA 2265 >seq18312 Length=2245 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| |||||| ||| || |||||||| || || || Sbjct 2095 TCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAG 2154 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || ||||||||||| |||||||| || || || || ||||| || | Sbjct 2155 AGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGAT 2214 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 || ||||||||||||||||| || || ||| Sbjct 2215 GCCCTCCTTGTCCTGGATCTTCTGCTTGACG 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158831368051985