Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1251 109 5e-19 seq4375 104 2e-17 seq2369 91.5 1e-13 >seq1251 Length=1604 Score = 109 bits (120), Expect = 5e-19 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | ||||| || || |||||||| || || || || ||||| Sbjct 1268 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATC 1327 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 || || || || | || |||||||| ||||| || || || |||||||||||||| || Sbjct 1328 GGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 1387 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 |||| | || ||| |||||| || ||||| || | ||| | | | || || | | Sbjct 1388 TGGG-ATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATGGTGTCAGATGGC 1445 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | ||||| |||| || ||||| || || |||||||| ||||| Sbjct 1446 TCAACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | ||||| || || |||||||| || || || ||||| || Sbjct 802 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTC 861 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 | || || || | || |||||||| ||||| ||||| || |||||||||||||| || Sbjct 862 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 921 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT 39206 |||| | || ||| |||||| || ||||| || Sbjct 922 TGGG-ATGCCCTCCTTGTCCTGAATCTTCTGCTT 954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || |||||||| || || || || || || | || || || | || || Sbjct 340 CACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCCTC 399 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| ||||| ||||| || |||||||||||||| |||||| | || ||| |||||| Sbjct 400 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCCT 458 Query 39194 TGATTTTCTGTTT 39206 ||| ||||| || Sbjct 459 GGATCTTCTGCTT 471 >seq4375 Length=1004 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || |||||||| || || || || ||||| | ||||| || | || || Sbjct 13 CACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCGGCCATCCTC 72 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| ||||| ||||| || |||||||||||||| |||||| | || ||| |||||| Sbjct 73 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCCT 131 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || ||||| || | ||| | | | || || | ||| || || | ||||| | Sbjct 132 GAATCTTCTGCTTCA-CGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGTGATGGTC 190 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| || || || ||||| ||||| Sbjct 191 TTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq2369 Length=1144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | | || | ||||| || || |||||||| || || || ||||| || Sbjct 360 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTC 301 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 | || || || | || |||||||| ||||| ||||| || |||||||||||||| || Sbjct 300 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 241 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT 39206 |||| | || ||| |||||| || ||||| || Sbjct 240 TGGG-ATGCCCTCCTTGTCCTGNATCTTCTGCTT 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429432579706757