Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4375 91.5 1e-13 seq1251 86.0 4e-12 >seq4375 Length=1004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || |||||||| || ||||| | | Sbjct 222 ATGCAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAGCCATCT 163 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||| ||||| || || | || || || || Sbjct 162 GACACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 103 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || || || || | ||||| | ||||||||| Sbjct 102 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAAC 43 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 42 ATCCAGAAGGAG 31 >seq1251 Length=1604 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || ||||| |||||||| || ||||| | | Sbjct 1498 ATGCAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCT 1439 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| || || | || || || || Sbjct 1438 GACACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1379 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || || | |||||| | |||||||||| Sbjct 1378 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAAC 1319 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 1318 ATCCAGAAGGAG 1307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337920664287212