Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1251 140 8e-28 seq2369 123 6e-23 seq18313 107 5e-18 seq18312 104 6e-17 seq10306 84.2 5e-11 seq3376 84.2 5e-11 >seq1251 Length=1604 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| |||||| || || |||| |||||||||| || ||| Sbjct 1277 ACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGACAGAGT 1336 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| || || || || Sbjct 1337 GCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCC 1396 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||||||||| || | || || || | Sbjct 1397 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTCAACATCAAG 1456 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| || ||||| |||| Sbjct 1457 AGTGATGGTTTTGCCGGTCA 1476 >seq2369 Length=1144 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || ||||| || ||| || || || | ||||| || | || ||| Sbjct 817 ACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGT 758 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || ||||| || || || || Sbjct 757 GCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCC 698 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| || || ||||| || | || || || | Sbjct 697 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAG 638 Query 225672 CGTGATCGTCTTGCCCGTCAAAG 225694 ||||| |||||||| |||| || Sbjct 637 AGTGATGGTCTTGCCAGTCAGAG 615 >seq18313 Length=2265 Score = 107 bits (118), Expect = 5e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| |||||| || || |||| ||||| ||| || ||| Sbjct 2103 ACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGT 2162 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || || || || || || || Sbjct 2163 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCC 2222 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| |||||||| ||||| || || |||||||| Sbjct 2223 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTC 2264 >seq18312 Length=2245 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| |||||| || || |||| ||||| ||| || ||| Sbjct 2098 ACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGT 2157 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || || || || || || || || Sbjct 2158 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCC 2217 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 |||||||| |||||||| ||||| || Sbjct 2218 CTCCTTGTCCTGGATCTTCTGCTTGAC 2244 >seq10306 Length=3084 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || |||| |||| |||||||||||| |||||| ||| || | | Sbjct 2906 TGGTAAGGTTAGGCGCGTAGTATCGCATTAAACCACATGTTCCACCACTTGTATAGACCC 2847 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| |||||||||||| || | ||| || || | || |||| Sbjct 2846 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCATACTTCTCCGGCGGGGTGCTTCACGC 2787 Query 7855 GTTAGCTT 7862 ||| |||| Sbjct 2786 GTTCGCTT 2779 >seq3376 Length=2897 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || |||| |||| |||||||||||| |||||| ||| || | | Sbjct 607 TGGTAAGGTTAGGCGCGTAGTATCGCATTAAACCACATGTTCCACCACTTGTATAGACCC 666 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| |||||||||||| || | ||| || || | || |||| Sbjct 667 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCATACTTCTCCGGCGGGGTGCTTCACGC 726 Query 7855 GTTAGCTT 7862 ||| |||| Sbjct 727 GTTCGCTT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192201335062766