Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq13161 87.8 2e-12 seq13160 87.8 2e-12 seq13159 87.8 2e-12 >seq13161 Length=3939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 149349 AACTGCCAAATGATAGGCGTCAAATTGTTTCAGCATGGAATCCAGCTGAAATCAATCAAA 149408 ||| ||| | ||||| ||| || || ||||||||||||||| |||| | || ||| Sbjct 649 AACAGCCTGAAGATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAA 590 Query 149409 TGGCATTACCGCCCTGTCATATGTTCTATCAGTTTAATGTGCGTAATGGT-TATCTTGAT 149467 ||||||| || || ||||||||||||| |||||| |||| ||||||| || | || Sbjct 589 TGGCATTGCCACCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCAT 530 Query 149468 TTACAATGGTATCAACG 149484 | ||| ||||||||| Sbjct 529 GT-CAAATGTATCAACG 514 >seq13160 Length=3470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 149349 AACTGCCAAATGATAGGCGTCAAATTGTTTCAGCATGGAATCCAGCTGAAATCAATCAAA 149408 ||| ||| | ||||| ||| || || ||||||||||||||| |||| | || ||| Sbjct 1871 AACAGCCTGAAGATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAA 1930 Query 149409 TGGCATTACCGCCCTGTCATATGTTCTATCAGTTTAATGTGCGTAATGGT-TATCTTGAT 149467 ||||||| || || ||||||||||||| |||||| |||| ||||||| || | || Sbjct 1931 TGGCATTGCCACCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCAT 1990 Query 149468 TTACAATGGTATCAACG 149484 | ||| ||||||||| Sbjct 1991 GT-CAAATGTATCAACG 2006 >seq13159 Length=3473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 149349 AACTGCCAAATGATAGGCGTCAAATTGTTTCAGCATGGAATCCAGCTGAAATCAATCAAA 149408 ||| ||| | ||||| ||| || || ||||||||||||||| |||| | || ||| Sbjct 1871 AACAGCCTGAAGATAGACGTATCATAGTGTCAGCATGGAATCCATCTGATCTAGATAAAA 1930 Query 149409 TGGCATTACCGCCCTGTCATATGTTCTATCAGTTTAATGTGCGTAATGGT-TATCTTGAT 149467 ||||||| || || ||||||||||||| |||||| |||| ||||||| || | || Sbjct 1931 TGGCATTGCCACCATGTCATATGTTCTGTCAGTTCTATGTTGCTAATGGTGAATTGTCAT 1990 Query 149468 TTACAATGGTATCAACG 149484 | ||| ||||||||| Sbjct 1991 GT-CAAATGTATCAACG 2006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546188564401200