Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4375 176 9e-39 seq1251 161 2e-34 seq2369 154 3e-32 seq18313 114 3e-20 seq18312 111 3e-19 >seq4375 Length=1004 Score = 176 bits (194), Expect = 9e-39 Identities = 174/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 282878 ACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGT 282937 |||||| || || ||||| || | ||||| || || ||||||||||| |||| || || Sbjct 1 ACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGT 60 Query 282938 GCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACC 282997 |||||||||||| || || || || |||||||||| ||| || |||||| || || || Sbjct 61 GCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCC 120 Query 282998 CTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGA 283056 ||||||||| || ||||| ||| || ||| | || |||||||| || | || || || | Sbjct 121 CTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNA 179 Query 283057 GAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 180 GAGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCAT 222 >seq1251 Length=1604 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||||| || || ||||||||||| || | Sbjct 1272 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGAC 1331 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || ||||||| ||| || |||||| || Sbjct 1332 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 1391 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | ||||| ||||| || | || || Sbjct 1392 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCGATGGTGTCAGATGGCTCAAC 1450 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || |||| ||||| || || |||||||| Sbjct 1451 ATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 1498 Score = 158 bits (174), Expect = 3e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| || || || ||||| || | ||||| || || || ||||||||||||| Sbjct 321 AACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAG 380 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||||||||||||| || || || || |||||||||| ||| || |||||| | Sbjct 381 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTG 440 Query 282991 GAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 | || ||||||||||| |||||||| ||| || ||| | || |||||||| || | || Sbjct 441 GGATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCA 499 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 || || || ||||| ||||| || |||| || Sbjct 500 ACATCCAGTGTGATGGTCTTGCCAGTCAGAG 530 Score = 158 bits (174), Expect = 3e-33 Identities = 162/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||||| || || |||||||| ||||||| Sbjct 806 CCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGAC 865 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| ||| || |||||| || Sbjct 866 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 925 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | || |||||||| || | || || Sbjct 926 ATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAAC 984 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 || |||||||| ||||| || |||| || Sbjct 985 ATCAAGAGTGATGGTCTTGCCAGTCAGAG 1013 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||||| || || |||||||||||||||| Sbjct 1500 CCACCACGCAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 1559 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACG 282976 || |||||||||||||| || || || || |||||||||| ||| Sbjct 1560 AGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACG 1603 >seq2369 Length=1144 Score = 154 bits (170), Expect = 3e-32 Identities = 161/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||||| || || || ||||| ||||||| Sbjct 356 CCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGAC 297 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| ||| || |||||| || Sbjct 296 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 237 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || ||| | || |||||||| || | || || Sbjct 236 ATGCCCTCCTTGTCCTGNATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCAAC 178 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 || |||||||| ||||| || |||| || Sbjct 177 ATCAAGAGTGATGGTCTTGCCAGTCAGAG 149 Score = 152 bits (168), Expect = 1e-31 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| || || || ||||| || | ||||| || || || ||||||||||||| Sbjct 824 AACCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAG 765 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||||||||||||| || || || || || ||||||| ||| || |||||| | Sbjct 764 ACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTG 705 Query 282991 GAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 | || ||||||||||| || ||||| ||| || ||| | || |||||||| || | || Sbjct 704 GGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTGTCAATAGTGTCAGATGGCTCA 646 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 || || |||||||| ||||| || |||| || Sbjct 645 ACATCCAGAGTGATGGTCTTGCCAGTCAGAG 615 >seq18313 Length=2265 Score = 114 bits (126), Expect = 3e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| || || || ||||| || | ||||| || || |||||||||||||| Sbjct 2096 AACCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 2155 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||||||||||||| || || || || || ||||| | ||| || || ||| | Sbjct 2156 TCAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGG 2215 Query 282991 GAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTC 283039 | || ||||||||||| |||||||| ||| || ||| | || || ||||| Sbjct 2216 GGATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATGGTGTC 2264 >seq18312 Length=2245 Score = 111 bits (122), Expect = 3e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| ||||| || || || ||||| || | ||||| || || |||||||||||||| Sbjct 2091 AACCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 2150 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || |||||||||||||| || || || || || ||||| | ||| || || ||| | Sbjct 2151 TCAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGG 2210 Query 282991 GAATACCCTCCTTGTCTTGGATCTT-TGCTT 283020 | || ||||||||||| |||||||| ||||| Sbjct 2211 GGATGCCCTCCTTGTCCTGGATCTTCTGCTT 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046449662451206