Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4375 154 1e-32 seq1251 140 2e-28 seq2369 105 5e-18 seq18313 100 2e-16 seq18312 100 2e-16 >seq4375 Length=1004 Score = 154 bits (170), Expect = 1e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| || ||||||||||| |||||||||||||| | ||| ||| Sbjct 4 CAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTGCG 63 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || || |||||||| || |||||||||| ||||||||| || | || | || || Sbjct 64 GCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTC 123 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||||||||||| | | || ||||| | | || || || | || Sbjct 124 CTTGTCCTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCNAGAGT 183 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || ||||| || || || |||||||||||||| |||||||| Sbjct 184 GATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATGAT 225 >seq1251 Length=1604 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| |||||||||||||| Sbjct 1268 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATC 1327 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || || ||||||| ||||||||| || | Sbjct 1328 GGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 1387 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | | |||||||| | | || Sbjct 1388 TGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATGGTGTCAGATGGCTC 1447 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | || || || || || || || ||||| || ||||| |||||| Sbjct 1448 AACATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATG 1499 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| |||||||| || || Sbjct 802 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTC 861 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| || |||||||||| ||||||||| || | Sbjct 862 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 921 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 || | || ||||| ||| ||||||||||||| Sbjct 922 TGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA 956 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| || ||||||||||| || |||||||| || | || ||| | || Sbjct 337 CAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATC 396 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || |||||||||| ||||||||| || | || | || ||||| || Sbjct 397 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 456 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||||||||||| | | || ||||| | | || || |||| || || || Sbjct 457 CTGGATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGTGTGATGGT 516 Query 44305 CTTTCCCGTGAG 44316 ||| || || || Sbjct 517 CTTGCCAGTCAG 528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| || ||||||||||| ||||||||||| || Sbjct 1496 CATGCCACCACGCAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTC 1555 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGC 44215 | ||| ||| | || || |||||||| || |||||||||| |||| Sbjct 1556 AGACAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGC 1604 >seq2369 Length=1144 Score = 105 bits (116), Expect = 5e-18 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||||||||||| || ||||| || || Sbjct 360 CATGCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTC 301 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| || |||||||||| ||||||||| || | Sbjct 300 AGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG 241 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 || | || ||||| ||| ||||||||||||| Sbjct 240 TGGGATGCCCTCCTTGTCCTGNATCTTCTGCTTCA 206 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| || ||||||||||| || |||||||| || | || ||| | || Sbjct 808 CAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATC 749 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || ||||||| ||||||||| || | || | || ||||| || Sbjct 748 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 689 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||||||||||| | | || ||||| | | || || |||| || || || Sbjct 688 CTGAATCTTCTGCTTCACGTTGTCAATAGTGTCAGATGGCTCAACATCCAGAGTGATGGT 629 Query 44305 CTTTCCCGTGAG 44316 ||| || || || Sbjct 628 CTTGCCAGTCAG 617 >seq18313 Length=2265 Score = 100 bits (110), Expect = 2e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| || ||||||||||| ||||||||||| ||| || ||| | || Sbjct 2112 CAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATC 2171 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || ||||| | |||||||||||| | || | || ||||| || Sbjct 2172 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 2231 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTC 44277 | ||||||||||| | | | |||||||| Sbjct 2232 CTGGATCTTCTGCTTGACGTTGTCAATGGTGTC 2264 >seq18312 Length=2245 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| || ||||||||||| ||||||||||| ||| || ||| | || Sbjct 2107 CAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATC 2166 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || ||||| | |||||||||||| | || | || ||||| || Sbjct 2167 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTC 2226 Query 44245 CGTTATCTTCTGCTT 44259 | ||||||||||| Sbjct 2227 CTGGATCTTCTGCTT 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359895680788413