Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1251 138 3e-27 seq4375 120 7e-22 seq2369 113 1e-19 >seq1251 Length=1604 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| ||||| || || || || || ||| Sbjct 1495 CAGATCTTTGTCAAGACACTGACCGGCAAAACCATCACTCTTGATGTTGAGCCATCTGAC 1436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || |||||||||||||| || || ||||| || |||||||| Sbjct 1435 ACCATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAG 1376 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | ||||| ||||||| ||| || Sbjct 1375 CGTCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGATTACAACATC 1316 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 1315 CAGAAGGAGAGCACTCTGCACCTGGT 1290 Score = 118 bits (130), Expect = 3e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 177940 CTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCA 177999 |||| || || || || ||||| || || || || || ||||| || || ||||| | Sbjct 1013 CTCTGACTGGCAAGACCATCACTCTTGATGTTGAGCCATCTGACACTATTGACAACGTGA 954 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | || |||||||||||||| || || ||||| || |||||||| || || ||||| || | Sbjct 953 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTG 894 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 | || ||||| || ||||| | ||||| | || |||||| |||| || || |||| Sbjct 893 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTATAACATCCAGAAGGAGAGCACAC 834 Query 178120 TGCATCTTGT 178129 |||| || || Sbjct 833 TGCACCTGGT 824 >seq4375 Length=1004 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || || || || || ||| Sbjct 219 CAGATCTTCGTGAAGACACTGACCGGCAAGACCATCACTCTNGATGTTGAGCCATCTGAC 160 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || |||||||||||||| || || ||||| || |||||||| Sbjct 159 ACTATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAG 100 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || || | ||||| ||| || Sbjct 99 CGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACACTGTCTGATTACAACATC 40 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || Sbjct 39 CAGAAGGAGAGCACTCTGCACCTGGT 14 >seq2369 Length=1144 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 177940 CTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCA 177999 |||| || || || || ||||| || || || || || ||||| || || ||||| | Sbjct 615 CTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCTGACACTATTGACAACGTGA 674 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 | || |||||||||||||| || || ||||| || |||||||| || || |||||||| | Sbjct 675 AGCAGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTG 734 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 | || ||||| || ||||| | ||||| | || || ||| | || || || |||| Sbjct 735 GCAAGCAGCTTGAGGATGGCCGCACTCTGTCTGACTACAACATTCAGAAGGAGAGCACAC 794 Query 178120 TGCATCTTGT 178129 |||| || || Sbjct 795 TGCACCTGGT 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203398237041266