Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterococcus_20sp._20DN1_20[genbank_20GCA_5F000498555.1_202013-11- 22] 21,589 sequences; 60,742,704 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1251 150 2e-31 seq4375 143 2e-29 seq2369 136 4e-27 seq18313 125 7e-24 seq18312 125 7e-24 seq1250 89.7 5e-13 >seq1251 Length=1604 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 1271 GCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCGGA 1330 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 1331 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGG 1390 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || || |||||| ||| | | | ||||| | ||| | Sbjct 1391 GATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATGGTGTCAGATGGCTCAA 1449 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || ||||| || ||||| ||||| || || ||||||||| Sbjct 1450 CATCAAGAGTGATGGTTTTGCCGGTCAGTGTCTTGACAAAGATCTGCATG 1499 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| ||||| |||||||||||||||||||| ||||| || Sbjct 323 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 382 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 383 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGG 442 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||||| ||| | | | |||||| | ||| || Sbjct 443 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTGTCAATAGTGTCAGATGGCTCAAC 501 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAG 41841 |||| || || || || || ||||| Sbjct 502 ATCCAGTGTGATGGTCTTGCCAGTCAG 528 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||| |||||||||||||| ||||||||||| || Sbjct 805 GCCTCCACGCAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGGATGTTATAGTCAGA 864 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 865 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 924 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| || || ||||||| Sbjct 925 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCA 956 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 1499 GCCACCACGCAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCAGA 1558 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGC 41740 || ||||| | || || ||||||||||| || || ||||| ||| Sbjct 1559 CAGTGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGC 1604 >seq4375 Length=1004 Score = 143 bits (158), Expect = 2e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || ||||| | |||||| ||||| |||||||||||||| ||||| || || || || ||| Sbjct 2 CGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAATCAGACAGTGTG 61 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761 || | || || ||||||||||| || || ||||| ||||| ||||| | || | || | Sbjct 62 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCC 121 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCAC 41820 ||||||||| || || |||||| ||| | | | |||||| | ||| || || | Sbjct 122 TCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCAATAGTGTCAGATGGCTCAACATCNAG 180 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || ||||| ||||| ||||| ||||||||| Sbjct 181 AGTGATGGTCTTGCCGGTCAGTGTCTTCACGAAGATCTGCATG 223 >seq2369 Length=1144 Score = 136 bits (150), Expect = 4e-27 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| ||||| |||||||||||||||||||||||||| || Sbjct 357 GCCTCCACGCAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGAATGTTATAGTCAGA 298 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || ||||| ||||| ||||| | || Sbjct 297 CAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGG 238 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || |||||||||| || || ||||||| Sbjct 237 GATGCCCTCCTTGTCCTGNATCTTCTGCTTCA 206 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| ||||| |||||||||||||||||||| ||||| || Sbjct 822 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 763 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 762 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGTGGG 703 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || || |||||| ||| | | | |||||| | ||| || Sbjct 702 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCAATAGTGTCAGATGGCTCAAC 644 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAG 41841 |||| || || || || || ||||| Sbjct 643 ATCCAGAGTGATGGTCTTGCCAGTCAG 617 >seq18313 Length=2265 Score = 125 bits (138), Expect = 7e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| ||||| |||||||||||||| ||||| |||||| Sbjct 2098 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2157 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| || || ||||| || || | ||| Sbjct 2158 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2217 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || |||||||||| ||| || ||||| Sbjct 2218 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 2246 >seq18312 Length=2245 Score = 125 bits (138), Expect = 7e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| ||||| |||||||||||||| ||||| |||||| Sbjct 2093 CCTCCACGGAGACGCAGCACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 2152 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| || || ||||| || || | ||| Sbjct 2153 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 2212 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || |||||||||| ||| || ||||| Sbjct 2213 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 2241 >seq1250 Length=2728 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| ||||| |||||||||||||||||||| ||||| || Sbjct 92 CCTCCACGAAGACGCAGCACCAGGTGCAGTGTGCTCTCCTTCTGAATGTTGTAGTCAGAC 33 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGC 41727 || ||||| | || || ||||||||||| || Sbjct 32 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462179241486800