Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq69 168 1e-36 seq5172 122 2e-22 seq113 96.9 7e-15 seq91 89.7 1e-12 seq1571 86.0 1e-11 seq6093 84.2 5e-11 >seq69 Length=63067 Score = 168 bits (186), Expect = 1e-36 Identities = 613/937 (65%), Gaps = 33/937 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 || || |||||| | | ||| ||||| | |||||||||||||||| || | |||||| Sbjct 12533 TTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTCTGG 12592 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 || ||||||| | | || ||| || || |||||| | ||| |||| || Sbjct 12593 ACTGCTGAGGA-GCTAGACTTGGTGCACGATCTCAAGGACTGG---GCGAACCTCACGGA 12648 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 | | || ||||| || ||||| || | || | || || |||| | ||||| ||||| Sbjct 12649 CAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGT 12708 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 || || |||||| | |||||||| ||||| || || || || ||| || Sbjct 12709 GAACGAGAATCTGGCCATGAACTTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGTGCTT 12768 Query 229998 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGA 230057 ||||| | ||| | | ||| ||||| || ||| ||| | ||||| || || Sbjct 12769 TTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTCGCTGCTCATTGA 12828 Query 230058 CGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACATC 230115 | || ||| || ||| |||| ||| | | ||| | || ||||| | |||| Sbjct 12829 CACGTACATTAAAGAGGCGACGGAGAA-GGATC-ACCTTCTGCGCGCGATTGAGACCATC 12886 Query 230116 CCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTG--GTAAAT-CG 230172 ||| |||| || || || || ||||| | || ||| || || ||| | || Sbjct 12887 CCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCG 12946 Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 | || ||||| || | || | | | || ||||| ||| | || || || ||| Sbjct 12947 TACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTC 13006 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||| | |||||||||||| ||| ||| | |||||||||||| | | || |||||| Sbjct 13007 TGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAG 13066 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTCAAAGCT 230351 |||| ||||| || ||||| | || || | ||| | || ||||| || ||||| Sbjct 13067 CTCATTAGTCGAGATGAGGGCATGCA-CACGGACTTTGCGTGCCTCATGTACTCCAAGCT 13125 Query 230352 CCAGAACAAGCTACCATTCGA-GAC--GGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 ||||||||| || ||| ||| ||| | |||||| || ||||| | Sbjct 13126 AGTGAACAAGCTGCC---CGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGAT 13182 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| | ||||| | | ||| | | || | || |||||||||||| | | || Sbjct 13183 CGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCT 13242 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT-TACG--- 230524 ||| | |||||||| || || ||||| |||||| ||||| ||| | | || Sbjct 13243 CATGTGCCAGTACATTGAGTTTGTAGCGGACCGC----CTGTTGTACTCGCTCGGCGTGT 13298 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 ||| | | | | | |||||||| |||| | ||||| | || |||||||| || | Sbjct 13299 CGAAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCA 13358 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT-GATGAAGC- 230641 |||| ||||| ||||| |||||||| | || || || ||| ||||||| | || || Sbjct 13359 AGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGG-CTGGTGTAGGTGTCGCG 13417 Query 230642 -CCGAAGACAATATTTTTGCTATTGACGATGATTTTT 230677 |||||||| | | || || |||||| |||||||| Sbjct 13418 GCCGAAGACCAGGTATTCACTCTTGACGCTGATTTTT 13454 >seq5172 Length=1594 Score = 122 bits (134), Expect = 2e-22 Identities = 308/458 (67%), Gaps = 18/458 (4%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| ||||| || ||||||| | ||||||| ||| | ||||| || || ||| Sbjct 1413 TTTGCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTTTCTGGTAGCTTC 1354 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAAC 230289 ||| |||| || ||||| || || ||| ||||||| ||| | || | || || Sbjct 1353 TGCTCCATTTTCTGGCTT---AAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTTTCAAAT 1297 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAA 230348 || | ||| |||||| || || | ||| | |||| | |||| |||| | Sbjct 1296 GAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCT-GCTTGCTGTACCAGCA 1238 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACGG-TCAAACAAATCATTACAGAAGCAGTTGAAA 230407 ||| || ||||| || || ||| | | || ||| | || || |||| || Sbjct 1237 GCTTTTAAATAAGCTCCCGGCTGA-ACGCCTGCGTGAGATTATTGCCGACGCGGTTGCAA 1179 Query 230408 ACGAAAAGGAGTTCATTTGTGAC-GCTA--TTCCATGT-CGCCTTATTGGCATGAACGCT 230463 ||| |||| |||||| || | | || | ||| ||||| || || ||||||||| Sbjct 1178 TTGAACAGGA----ATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGGTATGAACGCT 1123 Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 || || ||| |||||||||||| || || || |||||| | | | |||| ||| | Sbjct 1122 GACCTGATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTACTGACACTGGGTGAG 1063 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 ||| |||| || || | || ||||||| |||||||| || ||||| | ||||| Sbjct 1062 CCCAAAATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGATTTCATTACAAGGC 1003 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 || ||||| ||||| ||||| |||||| ||| ||||| Sbjct 1002 AAAACCAATTTCTTTGAAAAACGTGTCTCTGAGTATCA 965 >seq113 Length=57615 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||||||||| || ||||||| ||||| |||||||| | ||| || || Sbjct 48924 CTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAG 48865 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||||||||| ||||||||||| | |||||| || || Sbjct 48864 GTGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTG 48805 Query 319110 CTTCCA 319115 |||||| Sbjct 48804 CTTCCA 48799 Score = 91.5 bits (100), Expect = 3e-13 Identities = 402/634 (63%), Gaps = 23/634 (4%) Strand=Plus/Minus Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || |||||| | ||||||||| |||||||| |||||| ||| | | ||||| Sbjct 48516 CTGCTCCACGAATTTGGACAGATTGCCCTTGTAGATCTTCAACTTACGCGTC---TCGTA 48460 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 || ||||| ||||| || ||||||||| || |||||||| ||||| || | | Sbjct 48459 GTGAATAATGTTCGTGCAGACCTTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGA 48400 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAG 319577 | |||| | ||| | || || | || ||| |||||| ||| | Sbjct 48399 GGTCACGTTAGTCAGGCCAGTGAGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAA 48340 Query 319578 ATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 319637 ||||| |||||||| || || |||| | | || ||| | ||||| ||||| || || Sbjct 48339 GTGGTTCGTCGGCTCATCGAGCAGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAG 48280 Query 319638 AGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 319697 | | |||||| ||||| || || ||||||||| | ||| |||| || || Sbjct 48279 CTCCAATTTCATCTTCCAACCGCCAGAAAGAGTGCCGA------CAGCTTGGGCCTGCAT 48226 Query 319698 ATCA------AAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 319751 ||| ||||| || |||||| ||| || | || | | | Sbjct 48225 CTCATCTGTGAAGCCCACACCAGATAGAGTGTCCTCGACCTCCTTGCGCGG------GGT 48172 Query 319752 TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 ||||| | | ||||| ||||| |||| | || | | | || || | Sbjct 48171 GTCCTTGAGGTCCTCATCCACCAGGATGAACTCAACCACAGACAGCTCCGCTTCCGAAGC 48112 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC-CCTTCAA 319870 | || | ||| ||||| | |||| |||| | || || | |||| || || | Sbjct 48111 CTGCAGGTTGTGCTCCACAAACACAGTCTTCAGCTCGTC-GCGGCTTGGAAATCCCTCCA 48053 Query 319871 GCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACA 319930 |||| |||||| ||| ||||||||||| || || ||||| |||||| || || |||| Sbjct 48052 GCTGACCGTTCGAAATGGCGCGCATCAGCGTCGACTTACCACACCCGTTGGGACCGCACA 47993 Query 319931 GACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCAC 319990 ||||||| |||| || || || || || || | ||||||| | || | |||| Sbjct 47992 GACCGTAACGGTGACCACGCTTAAGACGGAGACGAGCATTGTTCAACAAGATCATACCAC 47933 Query 319991 CATATGCCAGAGAAAATTCACAATCACACAGATC 320024 | || || || || || ||||| | ||| || || Sbjct 47932 CGTAAGCAAGCGAGAACTCACAGTTACAGAGGTC 47899 >seq91 Length=58235 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||| |||||| |||||||||| |||| ||||||| ||||||||||| |||| | Sbjct 45938 GCCCGTCTATCTCAGTTGGTAGAGCGCATGACTCTTAATCTTGTGGTCGTGGGCTCGATC 45997 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 45998 CCCACGGTGGGC 46009 >seq1571 Length=11208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 11069 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 11128 Query 165771 CCACG 165775 ||||| Sbjct 11129 CCACG 11133 >seq6093 Length=1825 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTT 165764 ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||| Sbjct 1770 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTT 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057698184066290