Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq179 154 2e-32 seq69 140 4e-28 seq5172 132 6e-26 seq8027 98.7 1e-15 >seq179 Length=46302 Score = 154 bits (170), Expect = 2e-32 Identities = 762/1205 (63%), Gaps = 10/1205 (1%) Strand=Plus/Plus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || || || |||||||| |||||||| || || | |||| | ||| ||||| | Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || || | |||||||||||| || || | || || |||||||| |||| || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 | ||||| | | || || ||| || | ||| || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 53685 CTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 || |||||| || || || | || |||| |||||| || || || |||| | Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 || | | || | ||| ||| | ||||| || ||| || || | || || | Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537 Query 53805 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 | || | ||| | | ||| ||||||||||| || || || ||| || ||||||||| Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTT 53923 || | || | ||||| ||| | | || || || | || | | | | Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGGGCATTGATCGTC--TTCCTCGCCCGTC 21654 Query 53924 TCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||||| ||||| | |||||| ||||||||||| ||||| | || || | Sbjct 21655 CCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGCC 21714 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| | Sbjct 21715 CTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGA 21774 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21775 ATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCAT 21834 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||| || | |||||| ||| | | | || | ||||||||||||||||| || | Sbjct 21835 GATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCG 21894 Query 54162 TCATAAC--TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || ||| ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21895 -CA-AACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21952 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | | ||| || ||||| || || || | ||||| || || ||| ||||| Sbjct 21953 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATT 22012 Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 |||| || ||||| || | || ||||| |||||| ||| || || | || Sbjct 22013 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 22072 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| |||| || ||||||||||| || || || |||||| |||| | || ||| Sbjct 22073 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22132 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || ||||| |||| | ||| || || |||||||| | || || | || || || Sbjct 22133 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22192 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 ||| | || | || | || | || || || | || | | || ||| || ||| Sbjct 22193 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22252 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 || || | ||||| || | | ||| || || || | ||| |||| || ||| | Sbjct 22253 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22312 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 | ||| || | ||| | |||||||| |||||||||| ||| || || || Sbjct 22313 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCG 22372 Query 54640 TTCGT 54644 |||| Sbjct 22373 GTCGT 22377 >seq69 Length=63067 Score = 140 bits (154), Expect = 4e-28 Identities = 390/591 (66%), Gaps = 13/591 (2%) Strand=Plus/Minus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 ||||| |||| |||||| | ||||| || || |||| || ||||| || || ||||| Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027 Query 24216 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 24274 || |||||||| || || ||| || || || || |||||||| ||||| || | ||||| Sbjct 13026 TTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAA 12968 Query 24275 GGCAATAAGTCTTTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGAGCCCAA 24329 || | || | || | || || | | | || || ||||| | |||||| Sbjct 12967 TGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAA 12910 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 | ||| |||||| ||||| || || ||||| || || | || | | || || Sbjct 12909 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 12850 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449 | ||||||| || || ||||| | || ||| | |||||| || ||||||||| Sbjct 12849 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 12790 Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509 || || || || || || || || || | ||| || | | || ||||| | | ||| Sbjct 12789 ATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA- 12731 Query 24510 CGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567 |||| || | ||| || ||||| || || |||||||||||||| || || | |||| Sbjct 12730 -GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACAT 12672 Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 | || ||||| | || | || || || ||| || |||| ||| | | Sbjct 12671 GCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCA 12612 Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 24687 || | || || | ||||| || || || || ||||| || ||||| | ||| | || Sbjct 12611 AGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGT 12552 Query 24688 CATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738 | || | ||| || ||||| | ||||| | || || || || |||||| Sbjct 12551 CGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTTCTTCACAAGGA 12501 >seq5172 Length=1594 Score = 132 bits (146), Expect = 6e-26 Identities = 425/648 (66%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 23834 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA 23893 ||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| ||| Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 23894 TGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA 23953 ||| || |||||| || || | ||||| | | | ||| ||| | |||| Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 23954 T-TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCA 24012 | |||| | || | || || |||||||| || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 24013 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 24072 | || || || || || | || | || | |||||| |||||||| | ||||||| Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 24073 CTGTTATAATAGATCTTACTGTTTC-TTCACTCGGTGGATACAATAAA---TGTTTAAAC 24128 | | ||||| || || | |||| ||| | | |||| || | || Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 | ||| || ||||| || || | || || || | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 | | || ||||| |||||||||||||||||||| || ||||| ||| | | | ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGA 1365 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307 ||||||||| ||||| | || |||||||| | ||| | || || || | || || | Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TT 1422 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | ||||| ||||||| || || || | || ||||||| || || || || Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 || || ||||||||| | | || || ||| ||||| | || ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 |||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 >seq8027 Length=1067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 289/445 (65%), Gaps = 3/445 (1%) Strand=Plus/Minus Query 52828 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 52887 ||| | ||| || || || |||||||| || ||||| || || |||| || ||||| Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413 Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947 |||||| || || ||||| || || || | | ||| | ||| | || ||| Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353 Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 53007 ||| ||| ||||| || | ||| || ||||| | || | | || ||||| Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293 Query 53008 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGA 53064 ||| | ||||| || | | ||| || | ||| |||| | | | || ||||| || Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233 Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124 |||| | | ||||| |||| |||| | |||||||||| | ||| ||| Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173 Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184 | | || ||||| ||||| || ||| || || ||||| || | || || || Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113 Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244 | ||| ||||| || || | | |||| ||||| || | ||| |||| ||||| || Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53 Query 53245 AGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||| || || || |||||| Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593652706029840