Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq179 154 2e-32
seq69 140 4e-28
seq5172 132 6e-26
seq8027 98.7 1e-15
>seq179
Length=46302
Score = 154 bits (170), Expect = 2e-32
Identities = 762/1205 (63%), Gaps = 10/1205 (1%)
Strand=Plus/Plus
Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504
|||| || || || |||||||| |||||||| || || | |||| | ||| ||||| |
Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237
Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564
|| || | |||||||||||| || || | || || |||||||| |||| || | |
Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297
Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624
| | | | || || | |||||||| || || || ||||| | || || | || |
Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357
Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684
| ||||| | | || || ||| || | ||| || ||| ||| || |
Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417
Query 53685 CTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744
|| |||||| || || || | || |||| |||||| || || || |||| |
Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477
Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804
|| | | || | ||| ||| | ||||| || ||| || || | || || |
Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537
Query 53805 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863
| || | ||| | | ||| ||||||||||| || || || ||| || |||||||||
Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596
Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTT 53923
|| | || | ||||| ||| | | || || || | || | | | |
Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGGGCATTGATCGTC--TTCCTCGCCCGTC 21654
Query 53924 TCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981
||||| ||||| | |||||| ||||||||||| ||||| | || || |
Sbjct 21655 CCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGCC 21714
Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041
| ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| |
Sbjct 21715 CTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGA 21774
Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101
| ||||| || | ||| | || | || | || | | | ||| || || ||
Sbjct 21775 ATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCAT 21834
Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161
||| || | |||||| ||| | | | || | ||||||||||||||||| || |
Sbjct 21835 GATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCG 21894
Query 54162 TCATAAC--TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219
|| ||| ||| |||||| || || ||||| | ||||| || |||| |||| |
Sbjct 21895 -CA-AACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21952
Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279
|| | | ||| || ||||| || || || | ||||| || || ||| |||||
Sbjct 21953 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATT 22012
Query 54280 ACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339
|||| || ||||| || | || ||||| |||||| ||| || || | ||
Sbjct 22013 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 22072
Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399
||| |||| || ||||||||||| || || || |||||| |||| | || |||
Sbjct 22073 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22132
Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459
|| ||||| |||| | ||| || || |||||||| | || || | || || ||
Sbjct 22133 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22192
Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519
||| | || | || | || | || || || | || | | || ||| || |||
Sbjct 22193 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22252
Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579
|| || | ||||| || | | ||| || || || | ||| |||| || ||| |
Sbjct 22253 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22312
Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639
| ||| || | ||| | |||||||| |||||||||| ||| || || ||
Sbjct 22313 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCG 22372
Query 54640 TTCGT 54644
||||
Sbjct 22373 GTCGT 22377
>seq69
Length=63067
Score = 140 bits (154), Expect = 4e-28
Identities = 390/591 (66%), Gaps = 13/591 (2%)
Strand=Plus/Minus
Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215
||||| |||| |||||| | ||||| || || |||| || ||||| || || |||||
Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027
Query 24216 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 24274
|| |||||||| || || ||| || || || || |||||||| ||||| || | |||||
Sbjct 13026 TTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAA 12968
Query 24275 GGCAATAAGTCTTTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGAGCCCAA 24329
|| | || | || | || || | | | || || ||||| | ||||||
Sbjct 12967 TGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAA 12910
Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389
| ||| |||||| ||||| || || ||||| || || | || | | || ||
Sbjct 12909 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 12850
Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449
| ||||||| || || ||||| | || ||| | |||||| || |||||||||
Sbjct 12849 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 12790
Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509
|| || || || || || || || || | ||| || | | || ||||| | | |||
Sbjct 12789 ATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA- 12731
Query 24510 CGTTCT--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 24567
|||| || | ||| || ||||| || || |||||||||||||| || || | ||||
Sbjct 12730 -GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACAT 12672
Query 24568 GTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627
| || ||||| | || | || || || ||| || |||| ||| | |
Sbjct 12671 GCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCA 12612
Query 24628 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 24687
|| | || || | ||||| || || || || ||||| || ||||| | ||| | ||
Sbjct 12611 AGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGT 12552
Query 24688 CATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738
| || | ||| || ||||| | ||||| | || || || || ||||||
Sbjct 12551 CGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTTCTTCACAAGGA 12501
>seq5172
Length=1594
Score = 132 bits (146), Expect = 6e-26
Identities = 425/648 (66%), Gaps = 15/648 (2%)
Strand=Plus/Plus
Query 23834 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA 23893
||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| |||
Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011
Query 23894 TGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA 23953
||| || |||||| || || | ||||| | | | ||| ||| | ||||
Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071
Query 23954 T-TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCA 24012
| |||| | || | || || |||||||| || || |||||||| ||| ||||
Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130
Query 24013 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 24072
| || || || || || | || | || | |||||| |||||||| | |||||||
Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190
Query 24073 CTGTTATAATAGATCTTACTGTTTC-TTCACTCGGTGGATACAATAAA---TGTTTAAAC 24128
| | ||||| || || | |||| ||| | | |||| || | ||
Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246
Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188
| ||| || ||||| || || | || || || | | || | ||| || |||||
Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306
Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247
| | || ||||| |||||||||||||||||||| || ||||| ||| | | | |||||
Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGA 1365
Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307
||||||||| ||||| | || |||||||| | ||| | || || || | || || |
Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TT 1422
Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367
| ||||| ||||||| || || || | || ||||||| || || || ||
Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482
Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427
|| || ||||||||| | | || || ||| ||||| | || ||| ||
Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542
Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475
|||| ||||| ||||| || || || ||||| ||||| |||||
Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590
>seq8027
Length=1067
Score = 98.7 bits (108), Expect = 1e-15
Identities = 289/445 (65%), Gaps = 3/445 (1%)
Strand=Plus/Minus
Query 52828 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 52887
||| | ||| || || || |||||||| || ||||| || || |||| || |||||
Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413
Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947
|||||| || || ||||| || || || | | ||| | ||| | || |||
Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353
Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 53007
||| ||| ||||| || | ||| || ||||| | || | | || |||||
Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293
Query 53008 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGA 53064
||| | ||||| || | | ||| || | ||| |||| | | | || ||||| ||
Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233
Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124
|||| | | ||||| |||| |||| | |||||||||| | ||| |||
Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173
Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184
| | || ||||| ||||| || ||| || || ||||| || | || || ||
Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113
Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244
| ||| ||||| || || | | |||| ||||| || | ||| |||| ||||| ||
Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53
Query 53245 AGTCGGCATAGGTGCCACCAATAAA 53269
||||||||| || || || ||||||
Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593652706029840
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