Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq478 179 4e-40 >seq478 Length=29740 Score = 179 bits (198), Expect = 4e-40 Identities = 402/592 (68%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || || ||||||||||| || || || |||||||| || | ||| || || || || ||| Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | | || | | || || || | | || ||||| | ||||||||| || ||| Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || || || || ||||||||||| | ||||||||||||| |||||| || | ||| ||| Sbjct 15510 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 15451 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 | || ||||| ||||| || | | |||||| |||||||| |||||| | || || Sbjct 15450 TCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCA 15391 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGGTTCCTCTTGATCTCC 145980 ||||| |||||||| | || |||| | | || || ||||| || || | Sbjct 15390 GCCGGATTCCAGGCCGACAGCACGA---TACGGCGATCAGAAGGGTTTGTCCGGAGTTTG 15334 Query 145981 CCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCAC 146039 ||||| || ||||||||||||||| || || || || | | || | ||| Sbjct 15333 TGTATCACCTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTC-GGCATGCATGTCGGT 15275 Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| || ||||| || | ||||||||| || || || || || ||||| || ||| Sbjct 15274 GTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCTC 15215 Query 146100 CCTGTG-CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158 || ||| | | || | | | ||| | || || || || ||| |||||||||| Sbjct 15214 CC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATAC 15156 Query 146159 TGACGCC-CCTCGC-GGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAG 146216 ||| || | || | || | | || | | |||| ||| | |||||||| ||||| Sbjct 15155 GGACACCTTTTTGCTGTAGCG-TGTGTGCACT-CGTGTCACCCTTAATGAACCACAGCAG 15098 Query 146217 CTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 ||| || || || | |||||| || | ||| || ||||||| || ||| Sbjct 15097 CTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAAC 15046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590008328963320