Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_001720.1 Length=43804 Score E Sequences producing significant alignments: (Bits) Value seq633 80.6 7e-11 >seq633 Length=24710 Score = 80.6 bits (88), Expect = 7e-11 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 1011 GCTGTTACGGTCGGATTGCTCCTCGCTCGGG-CTTGGCCGC-CAAATTTTTCATTGACGT 1068 |||| |||| || | || ||||||||||| |||| ||| || |||||| ||| Sbjct 14607 GCTGCTACGCCCGCGTGGCGCCTCGCTCGGGTCTTG--CGCTGAAGAATTTCATCGACAC 14664 Query 1069 CGGAGCGGGTGTTATCGATCCCGATTACCGCGGGAACGTTAGCGTGGTTTTGTTCAATTT 1128 || || ||||| |||||| ||||||||||||| ||||| ||||| | ||||||| Sbjct 14665 TGGCGCTGGTGTCATCGATGCCGATTACCGCGGTAACGTGGGCGTGCTCCTGTTCAACCA 14724 Query 1129 CTC--CGAGAGCTCGTTCAACATCAGGCGAGGCGATAGGGTAGCACAGCTTATTCTGGAG 1186 ||| || || || | ||| |||||| ||| | ||||| ||||| ||||| ||| Sbjct 14725 CTCGACGGAAG--ACTTTGCCGTCAAGCGAGGGGATCGAGTAGCGCAGCTCATTCTCGAG 14782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140035761368436