Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq69 260 1e-64 seq5172 145 8e-30 seq315 123 3e-23 seq1314 100 3e-16 seq479 89.7 5e-13 >seq69 Length=63067 Score = 260 bits (288), Expect = 1e-64 Identities = 428/606 (71%), Gaps = 16/606 (3%) Strand=Plus/Plus Query 116592 AGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACA 116651 |||||||| ||| || ||| | || || || ||| | | ||| |||||| ||||||| Sbjct 12510 AGAACCCCAACCGCTTTGTGCTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACA 12569 Query 116652 AAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAGC 116710 | ||||| || || ||||||||||| | |||||| | ||| || | || | | | || Sbjct 12570 AGAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGAGCTAGACTTGGTGCACGATCTCAAG- 12628 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||| | | | | ||||| ||||| || || |||||||| ||||| ||||| || Sbjct 12629 GACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTT 12688 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTGC 116828 || ||||| || ||||| || ||||||||||||| | || | ||| || | || |||| Sbjct 12689 GCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAAC-TTTAGC-AATGAAGTGC 12746 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 | ||| | || || |||||||| || ||||| |||||||| || || ||| | ||||||| Sbjct 12747 AAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGG 12806 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || | |||||| ||||| ||||||||| | | | | ||||| || | | || Sbjct 12807 AAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAG-GCGACGGAGAAGGATCACC-- 12863 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 | || ||| || ||||| || ||||| || | |||| ||| | |||||||| Sbjct 12864 -TTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAG 12922 Query 117005 TGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || || || || | | | || ||||| ||| |||| || || | ||||| Sbjct 12923 TGGTGCGACCCACA-AGTATCTTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGA 12981 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | ||||| |||||| ||| | | || |||||||| ||||| ||||| ||||| Sbjct 12982 AGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCAT 13041 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| ||||| | ||| ||||||||||| | || ||||| |||| ||||| Sbjct 13042 GCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTT 13101 Query 117184 TGCCTG 117189 ||| || Sbjct 13102 TGCGTG 13107 >seq5172 Length=1594 Score = 145 bits (160), Expect = 8e-30 Identities = 284/417 (68%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 ||| || || || |||| ||||||| || || |||||||| ||||||||||||| Sbjct 1483 CGCGATTGAAACCCTGCCTTGCGTCACCCGCAAAGCTGAGTGGGCTCTGCGCTGGATCG- 1425 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | | |||| || || | |||||||| || ||||| || ||| | || ||| | || Sbjct 1424 ----AAAAAGGCAGCTTT-GCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTT 1370 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 |||||| || || ||| | |||| || ||||| || || || ||||| ||||| ||| | Sbjct 1369 CTTTTCTGGTAGCTTCTGCTCCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTT 1310 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 || ||| || || || ||||| | || || || ||||| ||||| ||||| || Sbjct 1309 GAGTTTTTCAAATGAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCTGCTT 1250 Query 117193 GCTGTTCAAGCA---TTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCAC 117249 ||||| | |||| ||| ||| ||| || | ||| | | ||||| | | Sbjct 1249 GCTGTACCAGCAGCTTTTAAATAAGCTCCCG---GCTGAACGCCTGCGTGAGATTATTGC 1193 Query 117250 CGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGG 117309 ||||||||| || || || ||| || ||||||| || |||| || || ||| | || Sbjct 1192 CGACGCGGTTGCAATTGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGG 1133 Query 117310 ACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 | || || |||| || ||||||||||| || || ||| | ||||| || Sbjct 1132 TATGAACGCTGACCTGATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTACT 1076 >seq315 Length=59289 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | || || || || ||||| | ||||| || | Sbjct 38798 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38739 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | || || | | ||| | || || | ||||| ||||||||||| | || Sbjct 38738 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 38680 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| |||||||| |||| || || || | |||||| Sbjct 38679 CCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGCGACTA 38620 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | |||||||| || ||| | ||| || | || ||| Sbjct 38619 CAACATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38568 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || ||||| | ||||| || | | Sbjct 38492 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTCT 38433 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | ||| | || || | ||||| ||||||||||| | ||||| Sbjct 38432 GACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 38374 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| |||| || || || | ||||| || Sbjct 38373 GCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTATAA 38314 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | ||| || | || ||| Sbjct 38313 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38265 >seq1314 Length=13110 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || ||||| || ||||| | ||||| || | || Sbjct 2256 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2197 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | | ||| | || |||| || || || ||||| || | |||||| Sbjct 2196 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2137 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| || ||||| |||| ||||| ||| ||||||||| Sbjct 2136 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2077 Query 40870 ATCCAGAAGG 40879 ||||| |||| Sbjct 2076 ATCCAAAAGG 2067 >seq479 Length=33999 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || ||||||| ||| ||||| ||||| || || | || || || ||| Sbjct 31245 GACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGTACTCTGTCGGAC 31186 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||| | |||||||| || ||| | || || | ||||| ||| Sbjct 31185 TACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGTGGCGGTGGC 31129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515159415252080