Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq179 132 4e-26 seq315 86.0 5e-12 >seq179 Length=46302 Score = 132 bits (146), Expect = 4e-26 Identities = 325/491 (66%), Gaps = 4/491 (1%) Strand=Plus/Plus Query 132918 CGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGAC 132977 |||| |||||||| ||||| || || |||| ||||||||||||||| || || | Sbjct 20568 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20627 Query 132978 ACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035 | | || || || || || || | | | ||| ||||| || ||||| ||| Sbjct 20628 AGCTTACTGATC--GTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGT 20685 Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095 | | |||| || || | | | | || |||| || || ||||| | |||| Sbjct 20686 ACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACACTGTCT 20745 Query 133096 TGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGG 133155 || | | |||||||| | || || | || || |||||||| || ||| Sbjct 20746 TGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGT 20805 Query 133156 CCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGA 133215 || ||| | |||||| | ||| || || | ||| | || || || | | || | | Sbjct 20806 TCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCA 20865 Query 133216 GATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACG 133275 | |||| ||| || | ||||||||| || || ||||| | | || | |||||||| Sbjct 20866 GGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACG 20925 Query 133276 TGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGT 133335 || |||| || | || ||||||||||| || ||||| ||||||| ||||| ||||| Sbjct 20926 TGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTG 20985 Query 133336 ACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCC 133395 |||||| | || |||||| | | ||| |||||| | | ||| || ||| || ||| Sbjct 20986 GCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCC 21045 Query 133396 AGTCCCACAGA 133406 ||||||| ||| Sbjct 21046 AGTCCCAAAGA 21056 >seq315 Length=59289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || || || || || |||||||| ||||||| || || || || Sbjct 38586 CACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTC 38645 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 38646 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38705 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||| | ||| || || | || | ||| || Sbjct 38706 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38765 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || ||||||||||| Sbjct 38766 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || ||||| || || |||| || || || || Sbjct 38283 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTC 38342 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 38343 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38402 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | ||| | ||| || || | || | ||| || Sbjct 38403 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38462 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || |||||||||||| Sbjct 38463 CCCTGTCAACGTCTTCACGAAAATCTGCATG 38493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433781317919836