Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq179 132 4e-26
seq315 86.0 5e-12
>seq179
Length=46302
Score = 132 bits (146), Expect = 4e-26
Identities = 325/491 (66%), Gaps = 4/491 (1%)
Strand=Plus/Plus
Query 132918 CGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGAC 132977
|||| |||||||| ||||| || || |||| ||||||||||||||| || || |
Sbjct 20568 CGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGACGTC 20627
Query 132978 ACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035
| | || || || || || || | | | ||| ||||| || ||||| |||
Sbjct 20628 AGCTTACTGATC--GTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGCAAATGT 20685
Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095
| | |||| || || | | | | || |||| || || ||||| | ||||
Sbjct 20686 ACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACACTGTCT 20745
Query 133096 TGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGG 133155
|| | | |||||||| | || || | || || |||||||| || |||
Sbjct 20746 TGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCACCGTCGT 20805
Query 133156 CCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGA 133215
|| ||| | |||||| | ||| || || | ||| | || || || | | || | |
Sbjct 20806 TCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCA 20865
Query 133216 GATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACG 133275
| |||| ||| || | ||||||||| || || ||||| | | || | ||||||||
Sbjct 20866 GGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACG 20925
Query 133276 TGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGT 133335
|| |||| || | || ||||||||||| || ||||| ||||||| ||||| |||||
Sbjct 20926 TGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTG 20985
Query 133336 ACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCC 133395
|||||| | || |||||| | | ||| |||||| | | ||| || ||| || |||
Sbjct 20986 GCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTCTCCTTCAACTCCGTCC 21045
Query 133396 AGTCCCACAGA 133406
||||||| |||
Sbjct 21046 AGTCCCAAAGA 21056
>seq315
Length=59289
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || || || || || |||||||| ||||||| || || || ||
Sbjct 38586 CACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTC 38645
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || |||| || |||||||| || || || ||||||||||||||
Sbjct 38646 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38705
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | || | | ||| | ||| || || | || | ||| ||
Sbjct 38706 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38765
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || |||||||||||
Sbjct 38766 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38795
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||||| || || ||||| || || |||| || || || ||
Sbjct 38283 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTC 38342
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || || |||| || |||||||| || || || ||||||||||||||
Sbjct 38343 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38402
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || || | || | | ||| | ||| || || | || | ||| ||
Sbjct 38403 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38462
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| |||| || || || ||||||||||||
Sbjct 38463 CCCTGTCAACGTCTTCACGAAAATCTGCATG 38493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433781317919836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |