Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5172 107 2e-18 >seq5172 Length=1594 Score = 107 bits (118), Expect = 2e-18 Identities = 412/641 (64%), Gaps = 16/641 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| ||| || | |||||||||||||| ||||| |||| ||||||||| Sbjct 961 TTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAG 1020 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-ATCCCAATTCCAACA 16061 ||||||||| ||||| ||||||| | ||| |||| || |||| | || | Sbjct 1021 TTCCATAAAGTCAAAGGGATTTTGAGCGTGATA-CATTTTGGGCTCACCCAGTGTCAGTA 1079 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | | || || ||||| || || ||||||||||| | ||| |||||| || || | Sbjct 1080 GCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCA 1139 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 ||||| | || || || | ||| | | ||| || |||||| || | | Sbjct 1140 GGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTC---GGCAA 1196 Query 16182 TATCTCTTACTACACTATTTAAC--GGAG--GGTTTAATAAGTGTTTAAACATTATACAA 16237 || ||| || || | | |||| ||||| | || | ||| | || Sbjct 1197 TA-ATCTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTACAGCAAGCAG 1255 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 || || ||| ||||| ||||| || | | || | || |||||||| | | || Sbjct 1256 GCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCC 1315 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| || || || ||||||| ||| || || | | || |||||||||||| || Sbjct 1316 GGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAAAAGAAAATG 1375 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||||| |||||||| || || | |||||| | | | | | |||| ||| Sbjct 1376 CCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCTT------TTTCGATC 1429 Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 || |||||| | ||||| | | || || || | | || || || || Sbjct 1430 CAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCGCGGAAC 1489 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | ||||||||| | | || |||||||||||| | |||| | || |||| Sbjct 1490 AGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAGGTTTCA 1549 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 ||||| || |||||||| ||||||||||| ||||| || Sbjct 1550 GAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462458331263800